| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3476 |
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| Symbol | fliF |
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| ID | 5080511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 4039704 |
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| End bp | 4041380 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640500675 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_001184985 |
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| Protein GI | 146294561 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTACCA CTTTTGTTCA ATCAGGTCAG GATATTACGG GAACTGAGCG TTCGTCAGGC
CTCATTGCTG ATATGACCCA GAAATGGCAT AAGTTTAACC GTGGAGATCG TCAGGTCATT
GCCTTAGCGC TACTCGCTGT GGTTGTTGCC AGCGTAATAG TGTTAATGCT CTGGACGGCA
ACGGCGGGGT ATCGACCTTT ATACGGTAGC CAAGAAAATG TCGATACCTC TCAAGTGCTT
AATGTATTAG AAGCTGAAGG GATTCATTAC CGTCTTGAGG CAAATACAGG GGCAGTGCTG
GTGGCTGAGG AGCAAGTCGG TAATGCACGT ATGCTCTTGG CGGCGAAAGG CGTGAAAGCG
AAAGTACCTT CAGGTATGGA GGCGCTCGAT AATAATGCGC TTGGTACGAG CCAATTTATG
GAGCAAGCCA AATATCGCCA TAGTTTAGAA GGTGAGTTAG CCCGCACTAT TATGTCATTA
AAGTTAGTGA GAGCGGCCAG AGTTCATTTA GCCATACCTA AACAGAGTCT ATTTATTCGT
CAGGAGCCGG AATTACCCAC GGCCTCTGTG ATGTTGCAGC TTGACCCCAA TACACGTTTA
TCTGAATCAC AGGTTGAGGC CATTGTTAAC TTAGTGGCTG GCAGTGTAAC TGGACTCACC
GCAAGTAATA TTAAAGTCGT TGATCAAGAT GGTCGGTATT TAAGTGAAAA CATTTCGGGT
AATCAAGATC TTAGCCAGTC TAGGAATAAG CAATTACAAT ACACTCGTGA GTTGGAACAT
AGTTTAGTCG CCAATGCTGC CTCTATGCTG GAGCCTGTGC TTGGACACGA TAATTTCCAA
GTACGAGTGA CGGCAAAAGT TAACTTCAAT CAGGTTGAAG AAACCAAGGA GTCACTCGAT
CCACAAAATG TCGTAACCCA AGAGCGCACC AGTATTGATG ACTCGAGTAA TAGTATTGCG
GCAGGGATCC CTGGTGCTTT AAGCAATAAG CCTCCTCAGG TCGGGACCGC GGCAACGGAT
GACAAAACAC GTAATCTGAA GCAAGAGGAA AGTCGTCAAT ATGATGTTGG ACGTTCTGTG
CGTCATGTGC GTTACCAACA AATGCAGCTT GAAAACCTCT CTGTCTCAGT ACTCATCAAT
AGCGCGGCGG GTCAAGGGGT ATTTAATAAT GAGGCTCAGC TTGTTAAGTT TGGCAACATG
GTGAAAGATG CCATTGGTTT TTCAGCGGCA AGAGGTGACA GTTTTACCAT CAATGCTTTT
GAATTTACGC CGACAGTGGT GGCTGAAATA CCGACTTCTC CTTGGTGGCA ATCCGAAAAT
TATCAATCCT ATTTACGCTA TATCATAGGT GGGATCCTCG GTTTTGGGCT TATTTTGTTT
GTCTTACGTC CTTTGGTTAA ACACTTAACT CGTACGGCAC AAATCACTGC CCCTAGTATA
GAACCAGCAG CATTAAGTGC GGCATCAGCC AATGCCCTTG ATGGGCCAAC GGTTGATTAT
GCACCTAATC AAGCCCATCA ATTACCGAGT GCTGATTGGC TAGGCAGCCA AGGTTTGCCT
GAACCAGGAT CACCTTTAAC GGTGAAGATG GAACATTTAG CATTATTGGC AAATAAAGAA
CCCGCACGTG TTGCAGAAGT GATAGCTCAT TGGATAGGCG ATAAAGACGG TGAATAA
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| Protein sequence | MSTTFVQSGQ DITGTERSSG LIADMTQKWH KFNRGDRQVI ALALLAVVVA SVIVLMLWTA
TAGYRPLYGS QENVDTSQVL NVLEAEGIHY RLEANTGAVL VAEEQVGNAR MLLAAKGVKA
KVPSGMEALD NNALGTSQFM EQAKYRHSLE GELARTIMSL KLVRAARVHL AIPKQSLFIR
QEPELPTASV MLQLDPNTRL SESQVEAIVN LVAGSVTGLT ASNIKVVDQD GRYLSENISG
NQDLSQSRNK QLQYTRELEH SLVANAASML EPVLGHDNFQ VRVTAKVNFN QVEETKESLD
PQNVVTQERT SIDDSSNSIA AGIPGALSNK PPQVGTAATD DKTRNLKQEE SRQYDVGRSV
RHVRYQQMQL ENLSVSVLIN SAAGQGVFNN EAQLVKFGNM VKDAIGFSAA RGDSFTINAF
EFTPTVVAEI PTSPWWQSEN YQSYLRYIIG GILGFGLILF VLRPLVKHLT RTAQITAPSI
EPAALSAASA NALDGPTVDY APNQAHQLPS ADWLGSQGLP EPGSPLTVKM EHLALLANKE
PARVAEVIAH WIGDKDGE
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