| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3443 |
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| Symbol | |
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| ID | 5079834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 4014081 |
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| End bp | 4015049 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640500642 |
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| Product | nifR3 family TIM-barrel protein |
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| Protein accession | YP_001184952 |
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| Protein GI | 146294528 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000354075 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAGATTG GACCCTATCA ACTGAAGAAT CAGCTGATCG TGGCACCAAT GGCAGGTGTC
ACCGATCAAG TCTTCCGTAA TCTCTGTCTT CGTTATGGCG CAGCCCTTGC GGTGTCAGAG
ATGCTTTCAT CTAATCCTGA TGTTTGGGAA ACAGATAAAA GCCGCCAACG CATGATGCAT
TCTGGCGAGG AAGGTATACG CTCAGTGCAA ATTGCAGGAG CCGATCCTGA TTTAATGGCA
CAGGCTGCTC AGTTCAACGT TGAACAAGGC GCCCACATCA TTGATATCAA TATGGGATGT
CCTGCAAAAA AAGTGAATAA AAAGCTGGCT GGCTCAGCAC TGATGCAAAA CCCACCCTTA
GTAAAAGCCA TTTTACAAGC CGTGGTCGCC GCAGTGAATG TGCCCGTCAC GTTAAAGATT
CGCACAGGTT GGGCTCCAGA ACACAGGAAC GGTGTTCAAA TCGCCCAGAT TGCTGAGGAT
TGTGGTATTG CCTCACTCGC CGTTCACGGC CGTACGAGAC AATGCATGTA CAAAGGCGAT
GCCGAGTACG ACACCATTAA AGCAATCAAA CAGAATGTCT CGATTCCTGT TGTCGCCAAT
GGGGATATCG ACAGTCCGGA AAAGGCCCGC TTCGTGCTGG ACTACACTGG TGTCGATGCT
CTGATGATAG GACGGGGTGC TCAAGGACGA CCTTGGATTT TCAGAGAAAT CCAGCACTAC
TTGGAAACGG GTAATAAGCT AGCGCCCATT GAGGTTGCCC AGCAACGAGA AGTTATGCTG
GAACACCTCA CCAAACTGTA TGATTTATAT GGCGAATATA AGGGCATCCG CTTCGCTAGA
AAACATATGG GATGGTACCT AGACCAAGAA GCTCAGCGCC AATTTAGGGC TGACTTTAAT
CGGCTGGAAA CCGCTGCAGA ACAGTATTCC CTCGTGGAAT GTTATTTTGA TGAATTAGCA
CAGAATTAA
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| Protein sequence | MQIGPYQLKN QLIVAPMAGV TDQVFRNLCL RYGAALAVSE MLSSNPDVWE TDKSRQRMMH
SGEEGIRSVQ IAGADPDLMA QAAQFNVEQG AHIIDINMGC PAKKVNKKLA GSALMQNPPL
VKAILQAVVA AVNVPVTLKI RTGWAPEHRN GVQIAQIAED CGIASLAVHG RTRQCMYKGD
AEYDTIKAIK QNVSIPVVAN GDIDSPEKAR FVLDYTGVDA LMIGRGAQGR PWIFREIQHY
LETGNKLAPI EVAQQREVML EHLTKLYDLY GEYKGIRFAR KHMGWYLDQE AQRQFRADFN
RLETAAEQYS LVECYFDELA QN
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