Gene Sputcn32_3434 details

Gene Information

• Locus tag: Sputcn32_3434
• Symbol: rho
• ID: 5079825
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella putrefaciens CN-32
• Kingdom: Bacteria
• Replicon accession: NC_009438
• Strand: +
• Start bp: 4004437
• End bp: 4005702
• Gene Length: 1266 bp
• Protein Length: 421 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 640500633
• Product: transcription termination factor Rho
• Protein accession: YP_001184943
• Protein GI: 146294519
• COG category: [K] Transcription
• COG ID: [COG1158] Transcription termination factor
• TIGRFAM ID: [TIGR00767] transcription termination factor Rho

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACTTAA CTGAATTAAA AGACACGCCG ATTTCTGACC TAGTCTCGCT AGCCGAAAAT 
ATGAAACTCG AAAATATGGC CCGCGCTCGC AAGCAGGACA TTATTTTCTC AATCCTTAAA 
GCCCACGCCA AAAGTGGAGA AGACATTTTC GGCGGTGGGG TATTAGAAAT ACTCCAAGAC 
GGTTTCGGCT TCTTACGCAG CTCAGACGGA TCTTATTTGG CTGGTCCAGA CGATATTTAC 
GTCTCACCGA GTCAAATTCG CCGCTTCAAT ATGCGAACGG GTGACACCAT TTTTGGTAAG 
ATTCGTCCAC CAAAAGAAGG TGAACGATAT TTCGCTCTAC TGAAAGTCAA TGAAGTTAAC 
TTCGATAAAC CAGAAAACTC TCGCAATAAA ATCCTATTTG AAAACTTAAC CCCACTCCAC 
GCCGAAGAAC GTATGCGTAT GGAGCGTGGA AATGGCTCAA CTGAAGATAT CACTGCGCGT 
ATTCTGGATT TATGCTCACC GATTGGTAAA GGTCAACGTG GTTTGATCGT TGCACCACCA 
AAAGCCGGTA AAACGCTATT ACTTCAAGGT ATTGCTCAAA GCATCAGCTA CAACAACCCA 
GAAGTGGTGT TGATGGTATT GCTGATCGAC GAACGCCCAG AAGAAGTAAC AGAGATGCAG 
CGCCTCGTTA AGGGCGAAGT TATCGCATCA ACCTTCGATG AACCAGCCAG CCGTCACGTT 
CAAGTGGCTG AAATGGTGAT TGAAAAAGCA AAACGCTTGG TTGAGCACAA GAAAGACGTC 
GTTATCTTAC TCGACTCAAT CACCCGTTTA GCCCGTGCTT ATAACACTGT TATCCCATCA 
TCTGGCAAAG TGTTAACTGG TGGTGTGGAT GCTAACGCCC TACACCGTCC AAAACGCTTC 
TTCGGTGCGG CACGTAACAT CGAACACGGC GGCAGCTTGA CCATTATCGC CACAGCCTTG 
GTAGATACGG GTTCGAAGAT GGACGAAGTG ATCTACGAAG AATTTAAAGG TACAGGTAAC 
CAAGAGCTAC ATTTGTCACG TAAAGCGGCA GAAAAGCGCG TGTTCCCAGC CATTGACTTC 
AACCGCAGCG GTACGCGTCG TGAAGAAAAA CTCACGACTC AAGAAGAACT GCAAAAAATG 
TGGATCCTGC GTAAAATCCT CAATCCTATG GATGAGGTTA GCGCAATGGA ATTCTTAATC 
GATAAATTGG CGATGACCAA GACTAACGAA GAGTTCTTTA CCGCCATGAA ACGCACTAAG 
TCTTAA 

 

Protein sequence

MNLTELKDTP ISDLVSLAEN MKLENMARAR KQDIIFSILK AHAKSGEDIF GGGVLEILQD 
GFGFLRSSDG SYLAGPDDIY VSPSQIRRFN MRTGDTIFGK IRPPKEGERY FALLKVNEVN 
FDKPENSRNK ILFENLTPLH AEERMRMERG NGSTEDITAR ILDLCSPIGK GQRGLIVAPP 
KAGKTLLLQG IAQSISYNNP EVVLMVLLID ERPEEVTEMQ RLVKGEVIAS TFDEPASRHV 
QVAEMVIEKA KRLVEHKKDV VILLDSITRL ARAYNTVIPS SGKVLTGGVD ANALHRPKRF 
FGAARNIEHG GSLTIIATAL VDTGSKMDEV IYEEFKGTGN QELHLSRKAA EKRVFPAIDF 
NRSGTRREEK LTTQEELQKM WILRKILNPM DEVSAMEFLI DKLAMTKTNE EFFTAMKRTK 
S