| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3405 |
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| Symbol | |
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| ID | 5078027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 3962884 |
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| End bp | 3965463 |
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| Gene Length | 2580 bp |
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| Protein Length | 859 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640500605 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001184915 |
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| Protein GI | 146294491 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCACATTG GCAAGAAAAT ACTGATATTT ATAGTGGGCT TTTGTCTTCC AGCGGTGGTT
TTAGTCTCCT ATTGTTTAGG TAGTTGGTAT GACCATCGTG TAGAGTTATT ACGTCAAGAC
AGTGCTAACC GTGAACTTGC TAATATCCAG CAGCAATTCC AAATCGATGT CGATCGTTTG
GGCTTTCTCA CCAATATCTA TGCGTTACCT TTATCGCAGC TAGACAATAC TCAGCTTAAA
GATCTCGAAT CCTCTTGGCA CGCTAGTTCA ATGTCTGCCA ATCTCAGTTG GTATATCTTA
CGCCAGGGGG AGCTACAGAC CTTCTTTCCT AATGAGCGAG CCTTTCCAAA TGATAACCTA
CGGGAAATTG CGACAGCGGT GACTGAGGCC GATGATCAAA GAGTCGAAGG GGCATATTTA
ATTGGTAATC AGGCTTATGT CGTTACAGCG GTAAAATCTG CTCCCAATCA GTATGTGTTA
CTTGTGCGCC ATTTGGCAGA TAACGATTTG CTTGAATATG CTCAGGCATT GTTAGTGTCA
AAGGTGTCTA TGAGTCACGC AGCTTCGGTG CTCCCAACGA TAGAAGGGGT TCACAGTGAG
GTGATTGAAG TTCCCAGTTT ATTAAAAAAC ACCCCCATTT ATCTGCAAGT TCAATTTTCC
GATGGGCCTT TTCGAGAGGT GAGATTTAAA CTCGATTGGG TATCGATGGG TTTTATTCTG
CTTGGCGTCT TTATTGTTGG TTTAGGTTAT ATCTGGTTAC GAAGAGGTTT GCTCAAACCT
TTTAAGAATC TGATGCAACA ATTGGCGTTA ATCGATCCTA TGGCGAGCGT TTATCAGCCT
GTAACCGCAG ACGGTAATGA AGAATTAGAA GTGCTGGCTA GTCGAGTGAA TAGTTTATTA
GCGAGGATTT ATCAGCAAAA AGAACGAGCT AAAATCACTT TAGAATCGAT TGCCGAAGCG
GTCATTTTAA CCGATGTGGA CGCCAGAGTC ATTTATATGA ATCCTCGGGC AGAATCACTT
TTGAATATGG CAAGTTGTTA TGCGATTAAT CAGACACTTG CTAGTTTATT AAAAGCAGGA
GAACAGTTAA ATCAGGCTGT ATTTACCTGT ATTCGTCTCG GAGAGACTGC GCCACAGGTC
GAGAAAATCA AGTTATTAAC CGCTACACCT CGGATTATGG AGCGCAGTAT CAGTAATCTA
CGCAATCACG ATAAAGAAAT CGTCGGCACC GTAGTGATAT TACGCGATAT TACTCAAGAA
GAGTTACTGA AGCGCCAGTT ACAAAAAAGA GCCGATTTTG ACAGTATTAC TTTACTGCTT
AACCGTCAGG CCTTCGATGA GCGACTGCTG AGTTTTGCTG ACAACGCCAA AGCCATTGCC
GTATGCTATC TCGATTTAGA GCAATTCAAG CTTATCAATG ACAGTTGTGG CCATGCGGCA
GGGGATCGCA TGTTGGCCAT GGTTGCTAAA GTGATGCAAG CCTGCCTTGG TCCACAGGAG
TTATTGGGGC GGATTGGTGG GGATGAGTTC GGTTTAGTGA TTTGTAATCG CAGTGCTTTA
TCTGTGGTGC AGTTGTTAAA GCAGATCAGT GCTCAAGTCT CATTACAAGT GCTAAATGAT
AAAAACTGCA ATTATAAAGT TGGCTTAAGT ATCGGTGTCG CCTTTGGTCG TGCACCTTAT
ATCAATGCCC AAGAGTTGTT GAAAGATGCT GATATTGCCT GTCTTGCTGC TAAAGCGAAG
GGGGCGAATC AAATCCATAT TTATGATGAT AAAGATAAAG AGCTCACCTA CCAACGAAAT
GCACCTAAGT GGGCGGTAAG GATTGCTCAA GCCATTGAAG AAAATGAACT TATTTTGTAC
TACCAACCTA TTAGAGGCTT AGGAACGGGT CCACAACGGC AACGGATGGA GATCCTACTG
CGAATACAGG AACCCTGTGG TCGCATTTTA GCCCCTGCAC AGTTTATTGC TGCCGCAGAG
CGATTTAAGC TGATGCCAGA AATAGATAAA GAAGTGATCC GAAAGGCTTT TTTATGGTTG
TCTTTACATC CAGTCCTGTG GCCAGATCAT TGTATTTCAA TTAACCTTTC AGGCAATAGC
CTTGGTGCTG AAGGGATGGT GGAATATATT GCCCAACAGC AAAGGGTATT TGATATTCCA
AGCCAATGTA TTTGTTTTGA AATTACCGAA ACTACGGCGA TTCAAAATCG AAACCGCGGC
ATGGAAATGC TCAAACAGTT ACGAAAACTC GGTTTTTCAT TCGCGTTGGA TGACTTTGGT
AGTGGTTTTG CCTCCTACGG CTACTTGCGT GAACTCCCTG TGGATTATGT GAAAATCGAT
GGTTGTTTTA TCAAAAACTT AGCCGTAAAC GCTAAAGATT ACGCCATTGT TAAATCGATT
CAGGATGTTT GCCGTGTGAT GGGCATTGAA ACTGTTGCTG AGTTCGTTGA AAATCAAGAT
ATTATTGATA GGTTACAAAC TATAGGGATT AATTATGCCC AAGGGTATGC AATAGGGCGC
CCACAACCAC TCAGCTTGTA TCGTGAGCAA TATGAGATGG GTTTAGCACA ACGCGCATGA
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| Protein sequence | MHIGKKILIF IVGFCLPAVV LVSYCLGSWY DHRVELLRQD SANRELANIQ QQFQIDVDRL
GFLTNIYALP LSQLDNTQLK DLESSWHASS MSANLSWYIL RQGELQTFFP NERAFPNDNL
REIATAVTEA DDQRVEGAYL IGNQAYVVTA VKSAPNQYVL LVRHLADNDL LEYAQALLVS
KVSMSHAASV LPTIEGVHSE VIEVPSLLKN TPIYLQVQFS DGPFREVRFK LDWVSMGFIL
LGVFIVGLGY IWLRRGLLKP FKNLMQQLAL IDPMASVYQP VTADGNEELE VLASRVNSLL
ARIYQQKERA KITLESIAEA VILTDVDARV IYMNPRAESL LNMASCYAIN QTLASLLKAG
EQLNQAVFTC IRLGETAPQV EKIKLLTATP RIMERSISNL RNHDKEIVGT VVILRDITQE
ELLKRQLQKR ADFDSITLLL NRQAFDERLL SFADNAKAIA VCYLDLEQFK LINDSCGHAA
GDRMLAMVAK VMQACLGPQE LLGRIGGDEF GLVICNRSAL SVVQLLKQIS AQVSLQVLND
KNCNYKVGLS IGVAFGRAPY INAQELLKDA DIACLAAKAK GANQIHIYDD KDKELTYQRN
APKWAVRIAQ AIEENELILY YQPIRGLGTG PQRQRMEILL RIQEPCGRIL APAQFIAAAE
RFKLMPEIDK EVIRKAFLWL SLHPVLWPDH CISINLSGNS LGAEGMVEYI AQQQRVFDIP
SQCICFEITE TTAIQNRNRG MEMLKQLRKL GFSFALDDFG SGFASYGYLR ELPVDYVKID
GCFIKNLAVN AKDYAIVKSI QDVCRVMGIE TVAEFVENQD IIDRLQTIGI NYAQGYAIGR
PQPLSLYREQ YEMGLAQRA
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