| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3382 |
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| Symbol | |
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| ID | 5078004 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 3937142 |
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| End bp | 3939175 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640500582 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_001184892 |
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| Protein GI | 146294468 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.672695 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGATC CACAACAAGG TTTGGGTGCC AATACTGGCG ACTGGCCCAA GGCGCTGTTT
TATACAGCCC TCATTTTCTC CATTTTTCAG GTTATTACTG CTGCGTTTCA TCCTGTATCC
ACCCAAGTAT TGCGGGCAAC CCATGTCGGC TTTTTGCTAC TTGTGGTTTT TTTAAGTTAT
CCCGCTGTGG GGAAATCTCG GCCATGGCAG CCCTTAGCTT GGTTACTCGG CATTGCAGGC
ATGGCAACTG CGGCCTATCA ATGGGTTTTT GAAGCTGATT TGATCCAACG CTCAGGCGAA
CTCACTGATG CGGATATGGT GATAGGTATT ATTCTGATTG TCTTAGTATT TGAAGCTGCT
AGACGGGTAA TGGGTTGGGC ACTCCCGATC ATTTGTTGCA TTTTTTTGGC TTACGGTTTA
TTTGGCCAAT ATCTTCCAGG TGAATTAATG CACCGTGGTT ATGGAGTTGA CCAAATAATC
AATCAATTAG CCTTTGGGAC TGAAGGGTTA TACGGTACAC CAACCTATGT ATCTGCAACG
TATATTTTCC TGTTTATTCT GTTTGGAGCT TTTTTAGAAC AGGCGGGAAT GATCCGATTA
TTTACCGATT TTGCTATGGG ATTATTTGGC CACAAACTGG GTGGCCCAGC AAAAGTTGCT
GTGGTGTCAT CCGCCATGAT GGGCACTATT ACGGGCTCAG GCGTTGCAAA TGTGGTGACT
ACCGGACAAT TTACGATCCC CCTAATGAAA CGCTTTGGCT ATCGTCCCGC ATTTGCCGGT
GGCGTTGAAG CAACCTCCAG TATGGGCAGC CAAATTATGC CGCCCATCAT GGGCGCCGTC
GCGTTTATTA TGGCTGAAAC CATTAACGTG CCCTTTATTG AAATTGCTAA AGCCGCACTG
GTTCCTGCAT TACTGTATTT CTGCTCCGTA TTCTGGATGG TGCACTTAGA AGCCAAACGC
GCCAATCTTT CAGGCTTACC TAAAGATCAG TGTCCCGATC CTTGGGCGGC AATAAAAGCG
CGTTGGTATC TGCTTATCCC GTTGTTTATT TTAATTTACT TGCTATTTTC AGGCAGAACA
CCGCTATTCT CAGGCATGGT GGGTTTAGCA CTTACCTCAA TCGTGATTTT AGGTTCAGCA
ATCGTATTAA GGTTGCCATC AAAGGCGATG CGTTTTGCAT TTTGGATAGC CTTAGGTGTA
CTTTGCGCTG GTTTTTTCCA ACTCGGCATT GCCGTTGTAT TTGCGGTTAT CGCCCTATTA
GTTGCGGTAT GTTGGTTTAT TAAAGGCGGC AAAGAAACCC TCGTTATCTG CTTGCATGCA
TTGGTAGAGG GTGCTCGTCA TGCGGTGCCT GTGGGTATCG CCTGTGCCCT CGTAGGTGTC
ATTATCGGCA TAGTGTCACT CACCGGTATA GCTTCTACTT TTGCCAGCTA TATATTGGCC
GTAGGGCAAG ATAACCTCTT CCTATCACTT GTGTTAACTA TGCTCACTTG CCTTGTTTTG
GGCATGGGTA TTCCGACTAT CCCAAACTAC ATTATCACCA GCTCAATTGC CGCGCCTGCC
CTACTGGATT TAGGCGTGCC GCTAATTGTG TCCCATATGT TTGTATTCTA TTTTGGCATT
ATGGCAGATC TAACCCCACC CGTAGCGTTA GCTTGCTTTG CAGCGGCTCC CATTGCTAAG
GAATCGGGGC TTAAAATTAG TCTATGGGCG ATTCGTATCG CGATTGCAGG CTTTGTGATC
CCTTTTATGG CAGTATACGA CCCCGCCTTA ATGTTACAAA GCGATAGCTG GTTAGCCACG
GGATTTGTCG TGCTTAAAGC AACGGTTGCG ATTGGTATTT GGGGCGTGAT ATTTACGGGC
TTCCTGTTAC AAAAACTCTA TTGGTGGGAA CGTCTTATCG GCTTCCTAGC CGGTGCAAGT
TTAATTCTTG CTACCCCACT GAGTGATGAA ATTGGCTTTG GTCTCGCACT CTTGTTTATC
CTGCAACACA GTTGGCGCGC CAGAAAACTA AAACGCCTTA TGGAACAAGG ATAA
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| Protein sequence | MSDPQQGLGA NTGDWPKALF YTALIFSIFQ VITAAFHPVS TQVLRATHVG FLLLVVFLSY
PAVGKSRPWQ PLAWLLGIAG MATAAYQWVF EADLIQRSGE LTDADMVIGI ILIVLVFEAA
RRVMGWALPI ICCIFLAYGL FGQYLPGELM HRGYGVDQII NQLAFGTEGL YGTPTYVSAT
YIFLFILFGA FLEQAGMIRL FTDFAMGLFG HKLGGPAKVA VVSSAMMGTI TGSGVANVVT
TGQFTIPLMK RFGYRPAFAG GVEATSSMGS QIMPPIMGAV AFIMAETINV PFIEIAKAAL
VPALLYFCSV FWMVHLEAKR ANLSGLPKDQ CPDPWAAIKA RWYLLIPLFI LIYLLFSGRT
PLFSGMVGLA LTSIVILGSA IVLRLPSKAM RFAFWIALGV LCAGFFQLGI AVVFAVIALL
VAVCWFIKGG KETLVICLHA LVEGARHAVP VGIACALVGV IIGIVSLTGI ASTFASYILA
VGQDNLFLSL VLTMLTCLVL GMGIPTIPNY IITSSIAAPA LLDLGVPLIV SHMFVFYFGI
MADLTPPVAL ACFAAAPIAK ESGLKISLWA IRIAIAGFVI PFMAVYDPAL MLQSDSWLAT
GFVVLKATVA IGIWGVIFTG FLLQKLYWWE RLIGFLAGAS LILATPLSDE IGFGLALLFI
LQHSWRARKL KRLMEQG
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