| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3319 |
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| Symbol | |
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| ID | 5078094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 3868463 |
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| End bp | 3870217 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640500520 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001184830 |
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| Protein GI | 146294406 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.777593 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAGTT TAGATCTCGC TAAAGAGCTT GATAAAATAA TTTCTAACGG GGCTATCAGC
CCATTATTCC AGCCTATTTT CAATATATTA GAACACAAGA TCCATGGATT TGAGGCCCTA
AGTCGCGGCC CAGAACACAG CCCATTATAT TCACCCGTTC CCCTTTTTCA GACCGCCGAA
CATCAGGGTA AACTCAGTGA ACTCGAAACC CTCTGTCGAC GGATTTCACT TGAGCAATTT
AAATTCCGTC AGTTTCAGGG GCGACTATTT ATCAATATCT CACCCAAGGC GCTGTTAGAT
CCCTGCCACC CCAAAGGTAT GACACTGCAA CTATTGCAAC AGCTTGGGAT TTCACCTTCA
CAGGTAGTTA TTGAACTCTC GGAGCAATAT CCTGCGGATG ATATAGACCT GCTTAAATCC
TGCTTAAATC ACTATCGTAG TCAAGGATTT ATGACGGCAA TTGACGATTT AGGTGCGGGA
TATTCTGGCT TAAGACTCTG GTCAGAATTG TCACCCGATT ATGTGAAGAT TGATCGTCAC
TTTATCCATC AGATCGACTC AACCCCAGTA AAACAAGAAT TTGTGCGATC CATTGTTGAA
CTCTGTCAGA GTTTAACCTG TAAAGTGATA GCCGAAGGGA TTGAAACTCA AGAGGAATTA
GCAGTACTTA AACAACTTGG CATTGTGTAT TGCCAAGGTT ATTTACTCGG TCGTCCTGAG
GCTATGCCCT GCAGAGCAAT GAAAGCCACC TTAGTTCCCA ATAATACCCA AGCACAACCC
CGATATAGTG AGTCAGCAGA AAGCCTCTGT TGCAGTGCCG TTACCGTTCT ACCAAACCTA
AAGCTTAAAC ATCTAAGTGA TACTTTTATC TCCCAACCTG CACTGCAAGC AGTTGTTGTG
GTTGAAGATC AAGTACCCCA AGGTATTATT AGCCGTGCAA CATTACTTGA GCTTTTTAGC
ACCCCCTATG GTCGAGCATT ACATGAAAAT CATGCCGTTA GCGAGGTCAT GGATCCTCAG
GTACTGCAGA TAGAAGCCAA TGAACCCCTT TCGACTGTTA GTCAGCTACT GACGTCAGAA
AGTGCAAATA CCGTGGCACA GCAATTTATT ATTCTGCGCC GTGGCAAATT GCTCGGCATT
GGTCACACCA AAGATCTATT ACAGCGCATA ACTGAGCACA GAATTAAAAT GGCACGCCAT
GCTAATCCAC TTACGGACTT GCCGGGAAAT GTGCCTATAC AAGAAGAGCT AAAGCGACTA
AGAATTCAAC AAAAGTCTTT TTACCTCGCT TATTTCGATC TGTGTCATTT TAAACCCTAC
AACGATATTT ATGGTTTTTG TCGTGGTGAT GAAGTGATTT GCGAAGTGGC CAATTTATTA
ATGAAATATA AAAGTGATAA CTGCTTTATT GGCCATGTGG GAGGCGATGA TTTTGTGATA
ATTAGTACAT GCGATCAAAT CGTAACTCGT TGTCAGCGGA TATTGACTGA CTTTGAACAC
CATAAACAAT TGTTCTATAG TGCCGAACAT TGGCAAGCAC AACAAATGCT GGCAGATGAT
AGACAGGGGC AAGCCTGCTA CCACAAACTT ATAAGCCTAT GCGTTGGCTT ACTCTCGCCG
GAACATACCC ATAATTGCAA TGAACATAGC TTGTCCACGC TGAGTGCAAG GGCAAAAAAA
CAGGCAAAAT CCGCAAGTAA TGGATTTTGC CTGTTGGAAA ATAATGCACT CAATCCACAC
GCATTAATCG CTTAA
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| Protein sequence | MTSLDLAKEL DKIISNGAIS PLFQPIFNIL EHKIHGFEAL SRGPEHSPLY SPVPLFQTAE
HQGKLSELET LCRRISLEQF KFRQFQGRLF INISPKALLD PCHPKGMTLQ LLQQLGISPS
QVVIELSEQY PADDIDLLKS CLNHYRSQGF MTAIDDLGAG YSGLRLWSEL SPDYVKIDRH
FIHQIDSTPV KQEFVRSIVE LCQSLTCKVI AEGIETQEEL AVLKQLGIVY CQGYLLGRPE
AMPCRAMKAT LVPNNTQAQP RYSESAESLC CSAVTVLPNL KLKHLSDTFI SQPALQAVVV
VEDQVPQGII SRATLLELFS TPYGRALHEN HAVSEVMDPQ VLQIEANEPL STVSQLLTSE
SANTVAQQFI ILRRGKLLGI GHTKDLLQRI TEHRIKMARH ANPLTDLPGN VPIQEELKRL
RIQQKSFYLA YFDLCHFKPY NDIYGFCRGD EVICEVANLL MKYKSDNCFI GHVGGDDFVI
ISTCDQIVTR CQRILTDFEH HKQLFYSAEH WQAQQMLADD RQGQACYHKL ISLCVGLLSP
EHTHNCNEHS LSTLSARAKK QAKSASNGFC LLENNALNPH ALIA
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