| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3248 |
|---|
| Symbol | |
|---|
| ID | 5080089 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 3774394 |
|---|
| End bp | 3776037 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640500445 |
|---|
| Product | sodium/hydrogen exchanger |
|---|
| Protein accession | YP_001184759 |
|---|
| Protein GI | 146294335 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4651] Kef-type K+ transport system, predicted NAD-binding component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACCGG CTATCCTTGT CATCACACTC GTCTGCGGCA TGCTCGTCAG CAGGATAGGA
CTCCCACCTC TCATCGGCTA TTTAGTGGCG GGCTTTGTGC TGTTTGTTTT AGGCATAGAA
AAAGAAAGTC TGCCACTACT GCAAGAACTC GCAAACCTCG GGGTTACCCT ATTGCTCTTT
GCTATTGGCT TAAAACTGGA TATTCGGAGT CTATTCAAAG CTGAGGTTTG GGCGGGTTCG
AGCATACACT TAATACTATC AATGCTAATA TTTGTGCCCA TTCTTAAAAT CTTAGGCCTT
ATCGGCTTAA GTCAACTGAC TAGCCTTAAT ATTGAGCAAC TTACCCTACT TGCTTTTGCC
TTAAGTTTTT CAAGCACCGT ATTTGCCGTA AAAGTATTGG AGGATAAGGG GGATATACAA
TCTCTCTATG GTCGTGTTGC CATTGGTATC CTGATTATGC AGGATATTTT CGCCGTACTG
TTTTTAACTA TTTCCAAGGG TGATGTACCT TCAGTTTGGG CCTTCGCATT ACTCTTATTA
CCGCTGGCTA AGCCGCTTAT TTACAAAGCC TTTGACCGTG TCGGCCACGG TGAACTATTA
GTGCTTTTCG GACTGGTGAT GGCACTTGTG GTCGGTGCTT GGTTATTTGA GTTTGTTGGC
CTTAAACCGG ATCTCGGTGC ACTGATCATT GGTATTTTGC TCGCTGGGCA TAAAAAATCC
TCTGAACTCG CAAAATCCTT ATTCTATTTT AAAGAACTTT TTCTTGTCGC CTTCTTCTTA
ACCATTGGGC TCAATGGCTT ACCTTCGGTA TCCGATATCG TGCTCGCCGC CCTTTTAGTG
CTGTTAGTAC CGTTAAAAAT TCTATTATTT GTCTATATTC TTACCCGCTT TAAGCTACGC
TCGCGTACCT CGATGTTAGG CTCCTTTAAT CTAGGTAATT TTAGTGAATT TGGTTTAATT
GTCGCCGCAG TGGCCACCAG CAAAGGTTGG TTACCTTCGC AGTGGTTAGT CATTATTGCA
GTGGCCTTAA GTTTTAGTTT CTTACTCGCA GCTCCGCTCA ATGCAACCGT TGGCAATATC
TATCAAAGGT TCCAACAGCG TTTAGTGAGA TTCGAAAAAC GTACATTACA TCCAGAAGAT
AAGCCAATCG TCATTGGCAA TCCCCGTTTC TTAATTCTAG GGATGGGTCG TATTGGTAGC
GGTGCCTACG ATGAGCTACG TAACAAATTT GAGGGTGAAA TCCTTGGTAT CGAACATAAG
CAAGAATTGG TGGATTTACA CAGAGCCAAC GGCCGCAATG TGGTCAAGGG CGATGCATCA
GATACCGACT TTTGGGAAAA ACTCGACCAT GCACCCAATC TCGAACTCGT ACTGCTCGCC
ATGCCACACC ATGCAGGAAA TATGTTTGCA GTTGAACAAC TCAAAAAACT CGATTATCAA
GGCAAAATCA GTGCGATAGT TCAGTACAGT GATGATGCCG ATGCATTAAG GGCATCTGGT
GTGCACAGTG TTTATAACTT GTACGAAGCC GCTGGTGCAG GTTTTGTCGA CCATGTTATC
CATGAATTAC TGCAAGCCTC TGATAAAACA ACACTCGAAG AGCTAGAAGC ATTAAAGCCA
AGTACATTAA ACAACGCGAG TTAA
|
|---|
| Protein sequence | MEPAILVITL VCGMLVSRIG LPPLIGYLVA GFVLFVLGIE KESLPLLQEL ANLGVTLLLF
AIGLKLDIRS LFKAEVWAGS SIHLILSMLI FVPILKILGL IGLSQLTSLN IEQLTLLAFA
LSFSSTVFAV KVLEDKGDIQ SLYGRVAIGI LIMQDIFAVL FLTISKGDVP SVWAFALLLL
PLAKPLIYKA FDRVGHGELL VLFGLVMALV VGAWLFEFVG LKPDLGALII GILLAGHKKS
SELAKSLFYF KELFLVAFFL TIGLNGLPSV SDIVLAALLV LLVPLKILLF VYILTRFKLR
SRTSMLGSFN LGNFSEFGLI VAAVATSKGW LPSQWLVIIA VALSFSFLLA APLNATVGNI
YQRFQQRLVR FEKRTLHPED KPIVIGNPRF LILGMGRIGS GAYDELRNKF EGEILGIEHK
QELVDLHRAN GRNVVKGDAS DTDFWEKLDH APNLELVLLA MPHHAGNMFA VEQLKKLDYQ
GKISAIVQYS DDADALRASG VHSVYNLYEA AGAGFVDHVI HELLQASDKT TLEELEALKP
STLNNAS
|
|---|
| |