| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3238 |
|---|
| Symbol | |
|---|
| ID | 5080079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3765112 |
|---|
| End bp | 3766167 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640500435 |
|---|
| Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| Protein accession | YP_001184749 |
|---|
| Protein GI | 146294325 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
|---|
| TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000276363 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATTACC AAAACGATGA CGTTCGCATT AAAGAAATCA AAGAATTACT TCCTCCCATT
GCGATTCTTG AACGATTTCC TGCTTCCGAA AAAGCCTCTG CCACCGTATT TAATGCCCGT
CAAAGTATTC ACCATATTTT AGCGAAAAAT GATGATCGCC TTTTAGTGGT AATCGGCCCA
TGCTCTATCC ATGATCCTAA AGCCGCATTG GAATATGGTC AGCGTCTTGT TTCTCTGCGC
GAGCATTATA AAGATCAACT TGAGATTGTG ATGCGAGTGT ATTTTGAAAA GCCAAGAACG
ACTGTGGGTT GGAAGGGATT GATCAACGAT CCTTATATGG ATAACAGTTT TAAACTAAAT
GATGGACTGC GTACCGCCCG AAAATTATTA GTGGATTTAA ATGATAGTGG TATGCCAACG
GCGGGAGAGT TCCTTGATAT GATCACGCCA CAATATATGG CCGACTTAAT GTGTTGGGGA
GCCATTGGTG CGCGTACAAC TGAGTCACAG GTACATCGAG AGTTGGCATC GGGGCTTTCG
TGTCCTGTCG GGTTTAAAAA TGGCACTGAT GGTACGATTA AAGTCGCCAT TGATGCGATT
GGTGCTGCAA ATGCACCACA CCATTTTCTT TCTGTCACCA AGTTTGGTCA TTCTGCGATT
GTGTCAACTA AGGGGAATCC CGATTGCCAT ATTATTTTGC GTGGTGGACG CGAACCTAAC
TACAGTGCGC CCCATGTCGC ACAGATTAGT GAGCAGCTAC AAAAAGCCAA ATTACCCGAT
AATGTGATGA TCGACTTTAG TCATGCTAAT AGTAGTAAAC AGTATCAGCG CCAAATGGTA
GTCGCTCAAG ATGTGGCTGA CCAAGTTGCC GCAGGCAATA AAGCTATTTT TGGCGTTATG
GTCGAGAGTC ATTTAGTGGA AGGGCGTCAG GATCTCGTTG AGGGGCAAGA TTTATGCTAC
GGCCAAAGCA TTACCGATGC CTGTATTGGT TGGGATGACA CTGAGCGTTT GTTGGCTGTA
TTAGCCCAAA GTGTGATTGA GCGCCGCAAG GCCTAA
|
|---|
| Protein sequence | MHYQNDDVRI KEIKELLPPI AILERFPASE KASATVFNAR QSIHHILAKN DDRLLVVIGP
CSIHDPKAAL EYGQRLVSLR EHYKDQLEIV MRVYFEKPRT TVGWKGLIND PYMDNSFKLN
DGLRTARKLL VDLNDSGMPT AGEFLDMITP QYMADLMCWG AIGARTTESQ VHRELASGLS
CPVGFKNGTD GTIKVAIDAI GAANAPHHFL SVTKFGHSAI VSTKGNPDCH IILRGGREPN
YSAPHVAQIS EQLQKAKLPD NVMIDFSHAN SSKQYQRQMV VAQDVADQVA AGNKAIFGVM
VESHLVEGRQ DLVEGQDLCY GQSITDACIG WDDTERLLAV LAQSVIERRK A
|
|---|
| |