| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3199 |
|---|
| Symbol | |
|---|
| ID | 5080142 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3724683 |
|---|
| End bp | 3726869 |
|---|
| Gene Length | 2187 bp |
|---|
| Protein Length | 728 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640500396 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001184710 |
|---|
| Protein GI | 146294286 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1944] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00702] uncharacterized domain
[TIGR03549] conserved hypothetical protein TIGR03549 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATCA AAGTTAATTT TCTCGACAAT CTTAGACTTG AAGCCAAGTT TGATGATTTT
ACCGTGACCG CCGATCAGCC GATCCGCTAC AAAGGTGATG GTTCTGCCCC TAGTCCGTTT
GATTATTTTT TAGCGTCATC AGCCCTGTGT GCGGCCTATT TCGTGAAGGT ATATTGCAAA
GCCCGTGATA TTCCAACGGA TAATATTCGC CTGTCGCAAA ATAATATTGT TGATCCTGAA
GATCGCTATA ACCAGATTTT CCAAATTCAG GTTGAGCTAC CCGAAGATAT TTCCGATAAA
GATCGCGAAG GTATTTTGCG CTCGATTGAC CGTTGTACCG TTAAAAAAGT GGTACAAACG
GGGCCAGAAT TTAAGATTGA AACCGTTGAA AACCTCGATG CCGATGCAAA CGCTATGCTG
ATGGGGCATC CAGAGGGTGA GAGCAGCACT TATATCTTGG GTAAAGATTT ACCGCTGGAG
CAGACCATTG CCAATATGAC GGCGATGCTC GCCGATCTAG GCATGAAGAT TGAAATCTCA
TCCTGGCGCA ATATTGTGCC GAACGTGTGG TCATTGCATA TCCGCGACGC AGCCTCGCCA
ATGTGTTTCA CCAATGGCAA AGGCGCAACC AAAGAAAGCG CGCTGTGCTC GGCACTCGGT
GAGTTTATTG AGCGGTTAAA CAATAACTTT TTCTATAACG ATCAGTTCTT TGGCGTTGAG
ATCGCCAATA GCGAATTTGT GCATTACCCC AATGAAAAGT GGTTTGCATT AGAAGAAGAC
GATTCGCTGC CAGCGGGGAT TTTGGATGAC TATTGTTTAG AGATTTATAA CCCAGATGAG
GAGCTTTGCG GCTCGCACTT GATTGACACC AATTCGGGCA ATATCAAGCG CGGTATCTGT
GCGATTCCTT ATACCCGTAA ATCCGACGGT GAAACGGTTT ACTTCCCGTC AAACCTGATT
GAAAACCTCT TCTTAAGCAA TGGTATGAGT GCGGGAAATA ACCTTAACGA AGCCCATGTG
CAGTGTTTAT CAGAAATTTT TGAACGTGCC GTTAAACGGC AAATCATTGA GCAAGAAATT
GTCTTGCCCG ATGTGCCTAT GTCTGTGCTG GAAAAATACC CTAGCATTTT GGCTGGCATT
AACGGTTTAG AAGAACAAGG TTTCCCCGTG GTGGTAAAAG ATGCCTCACT CGGCGGCCAG
TTCCCGGTAA TGTGTCTCAC TTTGATGAAT CCGAAAACCG GTGGTGTATT TGCCTCTTTC
GGCGCGCACC CAAGCTTTGA AGTGGCGTTA GAGCGCAGCC TAACGGAATT GCTGCAAGGT
CGCAGTTTTG AAGGGTTAAA CGATGTGCCA AAACCCACTT TTAACAGTAT GGCGGTGACT
GAGCCTGAAA ACTTTGTTGA GCACTTTATC GACTCAACGG GCGTGATTTC ATGGCGCTTT
TTTAGCAGCA AGCATGACTA TGAGTTCTGC GAATGGGATT TCTCCGGCAC TAACGAAGAA
GAAGCGGAAC GCTTATTCGG CATCTTAGAA GACCTAGGGA AAGAGGTGTA TATTGCTGAG
TTTACCGATT TAGGCGCCTC GGCCTGTCGT ATTCTTGTGC CTGATTATTC TGAGATTTAT
CCTGTTGATG ACTTGATTTG GGACAACACC AACAAGGCGT TGGCGTACCG TGAAGATATC
TTAAATCTGC ATTCATTAAG CACTAAACAA CTGGCTAATT TGGTTAACCG TTTAGAAGAA
AGCCAACTCG ATAACTATAC GGATATTCGT ACCCTGATCG GCATTGTATT TGATGAAAAT
ACCGTGTGGG GTAAGCTGAC GATTATCGAG CTGAAAATAT TGATTTATTT GGCACTCGGT
GAGCATGAAG AAGCCCTTGA GTTGGTCGGT GAGTTCCTGC AATTTAACGA TAACACGGTT
AAACGTGGTT TGTTCTACCA AGCGATGAAT GCCGTGCTGG AAGTGACCTT AGATGAAGAC
CTCGAACTCG AAGACTTTAT CCATAATTTC ACCCGTATGT TTGGTGAGGA AGTGATGAAT
GAGGTGGTCG GTAGTGTCAC AGGTAAAGTG CGCTTTAGCG GACTAACCAA GACCAGTATG
CAACTTGAGG GTATTGAGCC GCACTTAAGG CTTATTGAAA GCTATAAAAA ACTGCATCAA
GCCCGTAAAG CTAAAATGGC TAATTAA
|
|---|
| Protein sequence | MEIKVNFLDN LRLEAKFDDF TVTADQPIRY KGDGSAPSPF DYFLASSALC AAYFVKVYCK
ARDIPTDNIR LSQNNIVDPE DRYNQIFQIQ VELPEDISDK DREGILRSID RCTVKKVVQT
GPEFKIETVE NLDADANAML MGHPEGESST YILGKDLPLE QTIANMTAML ADLGMKIEIS
SWRNIVPNVW SLHIRDAASP MCFTNGKGAT KESALCSALG EFIERLNNNF FYNDQFFGVE
IANSEFVHYP NEKWFALEED DSLPAGILDD YCLEIYNPDE ELCGSHLIDT NSGNIKRGIC
AIPYTRKSDG ETVYFPSNLI ENLFLSNGMS AGNNLNEAHV QCLSEIFERA VKRQIIEQEI
VLPDVPMSVL EKYPSILAGI NGLEEQGFPV VVKDASLGGQ FPVMCLTLMN PKTGGVFASF
GAHPSFEVAL ERSLTELLQG RSFEGLNDVP KPTFNSMAVT EPENFVEHFI DSTGVISWRF
FSSKHDYEFC EWDFSGTNEE EAERLFGILE DLGKEVYIAE FTDLGASACR ILVPDYSEIY
PVDDLIWDNT NKALAYREDI LNLHSLSTKQ LANLVNRLEE SQLDNYTDIR TLIGIVFDEN
TVWGKLTIIE LKILIYLALG EHEEALELVG EFLQFNDNTV KRGLFYQAMN AVLEVTLDED
LELEDFIHNF TRMFGEEVMN EVVGSVTGKV RFSGLTKTSM QLEGIEPHLR LIESYKKLHQ
ARKAKMAN
|
|---|
| |