| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3172 |
|---|
| Symbol | |
|---|
| ID | 5080115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3694683 |
|---|
| End bp | 3696953 |
|---|
| Gene Length | 2271 bp |
|---|
| Protein Length | 756 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640500369 |
|---|
| Product | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase |
|---|
| Protein accession | YP_001184683 |
|---|
| Protein GI | 146294259 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0620] Methionine synthase II (cobalamin-independent) |
|---|
| TIGRFAM ID | [TIGR01371] 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000687351 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATTAA ATAGTCTTGG GTTTCCCCGT ATCGGGCGTC GTCGTGAATT GAAATTTGCC
TTAGAAAAAT ACTGGCGTGG TGAGAGCACT CAGGCACAAT TGCGTGAAGT GGCGAGTGAA
CTTCGCCGCA CCCATTGGCA GTGGCAAGCT GCTGCTGGCA TTGAGCAAGT TCCCGTAGGT
GATTTTGCCT TTTATGATCA AGTGCTGACC TTAAGCGCGA CTTTAAATGC CATTCCTGAG
CGTCATCGTG GTGAAGGAGC AATCGATCTC GATACTTTAT TCCGTGTTGC CCGCGGCAGA
GCGCCAACGG GCCAAGATGC GCCAGCCTCT GAAATGACCA AGTATTTCAA TACTAACTAT
CACTATCTGG TACCTGAGCT CAGCCAAAAC CAAGAGTTTT CGATTGCCTA TGAGCAGTTC
TTTGATGAAG TCAGCGAAGC GCAAGCACTA GGCTATAAAG CCAAACCTGT GCTACTCGGC
CCTGTTAGCT ACTTGTTCCT TGCTAAAACT GTGGGCCAAG AGTTTGATAA GTTAAGCTTA
TTACCTAATT TATTAACTGC TTATGCTGAC ATTTTGGCGC GTTTTGCTGC TCAGGGAGTG
CAATGGGTAC AGCTCGATGA GCCCATTCTC GCATTGGAAT TGGATGGCGA ATGGCAAGCG
GCGATCACTG AGGCGTATCA AGCCCTCAGC ATTACGAAGG TGAAGATCCT TCTTACCAGT
TATTACGGCG GTATCGCACA CCATCAAGCG CTGGTATCGG CCTTGCCGGT CGCGGGGTTG
CATGTCGATT TAGTCACAGC GCCGGATCAA TTGGCGGTCT TTGCCAATGC GCTTGGTCAA
GATCAAATTC TGTCGGCGGG TGTGGTCAAT GGTCGCAACG TGTGGGCGGC AGAGGCGGAT
TTGATTGCCG AACGCATAGG CACGGTTGCC CGTGATCTCG GAGATCGCTT GTGGATCGGT
ACTTCTTGCT CACTCCTGCA CAGCCCTGTG GATTTAGAGG TAGAAGCCAC GCTTGAGTCC
GCGCTGCGTC AACAACTCGC GTTTGCGAAG CAAAAATTAC TCGAACTGGC CAATGTGCGC
CAATTGCTAC TGGCACCTGA ATCGGTCGCG GCAAAAGAGA TTGTGCAAAC CTGTTTGGCA
CGCCGTGAGG CGAAAGCGCA GGCCGCCGAC AGTCAAGTGA TTGCTCGCGT TGCCGCCTTG
ACATCTGCCA ATTATGAGCG CGTTAGTGAT TTTAGCGTAC GCCAAGCTGT GCAGCAGCAG
AAGTATCGTT TACCTCTGTT GCCGACCACT ACCATTGGTT CCTTCCCACA AACACCGGCA
ATCCGTGGAC TACGCAGTCG CTGGCGCAAG GGCGAGCTGA GTGATGCACA ATATACTGAG
CAATTACAAC AAGTCACCCG CGATACTATC GACCGCCAGC TTAAACTCGG TATCGATGTG
CTGGTTCATG GTGAGGCCGA GCGCAACGAT ATGGTGGAAT ATTTTGGTGA GCAGCTTGCG
GGCGTTGGCT TTACCAAAAA TGGTTGGGTG CAAAGCTATG GTTCACGCTG TGTTAAGCCG
CCGTTGATCT ATGGTGATGT TAGTCGTCCA AAGGCGATGA CGGTTGATTG GGCCGAGTTT
GCCCAAAGTC TCACCGACAA GCCTGTAAAA GGCATGCTGA CTGGCCCTGT GACGATTCTG
CATTGGTCAT TCGCCCGTGA AGATATCGGC CGCGATGTGA TTGCGACTCA GCTGGCGCTG
GCGATCCGTG ATGAAGTGGT GGACTTACAA AATGCCGGTA TTGGCATTAT ACAAATCGAT
GAGCCCGCCT TCCGTGAAGG TCTGCCATTG AAACAAAGTG AGTGGCAAGC CTATTTAGAT
TGGGCGGTGA ATGCCTTTAA ACTCAGCGCT GCTGGGGTGA TTGATGAGAC TCAAATCCAC
ACCCACATGT GTTACAGCGA GTTTAACGAT ACAATTGCCG CGATTGCTGC CATGGATGCC
GATGTGATCA CTATCGAGAC TTCGCGTTCA CGGATGGAGT TACTCAACGC CTTCGAAGAC
TTTGAATATC CCAATGAAAT TGGCCCCGGT GTGTATGATA TTCATTCGCC AAACACCCCA
AGTGTGGAGG CCATGGTGCA CTTAATCGAG AAAGCGGCAC AAAAAGTGCC CGTACGTCAG
CTGTGGGTCA ACCCAGATTG TGGCCTAAAA ACCCGCACTT GGGATGAAGT CGAACCCGCC
TTAAAAAACA TGGTCGATGC CACACGGGAA CTACGTCGCC GACTAGGTTA A
|
|---|
| Protein sequence | MQLNSLGFPR IGRRRELKFA LEKYWRGEST QAQLREVASE LRRTHWQWQA AAGIEQVPVG
DFAFYDQVLT LSATLNAIPE RHRGEGAIDL DTLFRVARGR APTGQDAPAS EMTKYFNTNY
HYLVPELSQN QEFSIAYEQF FDEVSEAQAL GYKAKPVLLG PVSYLFLAKT VGQEFDKLSL
LPNLLTAYAD ILARFAAQGV QWVQLDEPIL ALELDGEWQA AITEAYQALS ITKVKILLTS
YYGGIAHHQA LVSALPVAGL HVDLVTAPDQ LAVFANALGQ DQILSAGVVN GRNVWAAEAD
LIAERIGTVA RDLGDRLWIG TSCSLLHSPV DLEVEATLES ALRQQLAFAK QKLLELANVR
QLLLAPESVA AKEIVQTCLA RREAKAQAAD SQVIARVAAL TSANYERVSD FSVRQAVQQQ
KYRLPLLPTT TIGSFPQTPA IRGLRSRWRK GELSDAQYTE QLQQVTRDTI DRQLKLGIDV
LVHGEAERND MVEYFGEQLA GVGFTKNGWV QSYGSRCVKP PLIYGDVSRP KAMTVDWAEF
AQSLTDKPVK GMLTGPVTIL HWSFAREDIG RDVIATQLAL AIRDEVVDLQ NAGIGIIQID
EPAFREGLPL KQSEWQAYLD WAVNAFKLSA AGVIDETQIH THMCYSEFND TIAAIAAMDA
DVITIETSRS RMELLNAFED FEYPNEIGPG VYDIHSPNTP SVEAMVHLIE KAAQKVPVRQ
LWVNPDCGLK TRTWDEVEPA LKNMVDATRE LRRRLG
|
|---|
| |