| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3169 |
|---|
| Symbol | |
|---|
| ID | 5080112 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3689709 |
|---|
| End bp | 3691124 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640500366 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_001184680 |
|---|
| Protein GI | 146294256 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.228737 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAATC TAATATTAAA TCGTAAAATT ATGTTACGTA CTTGCGCCAT CGCTGTAGGT
GTTGCATTAC TCGGCGGCTG CGGTAGTTTT ATGCGCTCAG ACTTTGAGCC CCTCGCGTTG
ACGATACCAA GTCATTGGCA GCATACACAG GTCAACGAAC AGGTGAGAGT TGATCCTTGG
TGGCAGCAGT TTCAGCAGCC AGATCTTAAT AAGTTAGTAA GCCAAGTGCT AAGCAGTAAC
AATGACTTAG CCCTTGCAAC CTTGACACTA CGTAAGGCGC GTTTACAGGC AGGGCTTGCC
CAAGATGCAC TTTACCCGCA GTTATCCTCA AACCTTTCTG CATCGCGCAG TAACCCCCTA
GATGGTGGCG AATCAACCAA GAGCTATCAG GCCAAGCTTT CAGTCAGTTA TGAAGTCGAT
TTATGGGGAA AAGTCTCGGC AGAGATGGAT CAAGCTCAGT GGTCGGCATT AGCGAGTGCG
GAGGATAGAG AAAGTACCAC TCAAAGTTTA GTGGCAACTA CAGCATCGCT TTATTGGAAG
ATGGGCTATT TAAATCAAAG GATTGCTTTA AGCAGCCGCA GTATTGACCA CAGTCGACAA
ACACTGGCAT TAACCCAGCG TCAGTATGCT TCTGGTGCGG TGACTCAAGT CAATGTGTTA
GAGGCCAAGC GTAGCCTAGC GGGACAAGAG GCATCCCATA GTCAACTTAT TCAACAGTTA
ACGGAGGCGG GAAATGCGCT TGCCATTTTA CTGAATCAAA CACCTGGAGA GGCTTTCGTT
GAGATTAACG CCTTACCTGA TGTTGCAGTG CCGGAGATTG CCGTGGGGAT GCCAGCGGAT
CTATTGGTGA GACGCCCTGA TGTGAAGGCA TCTTTATATC AATTACGTTC AGCACTCGCC
AGTAAAGATG CGACTTATAC CCGTTACTTT CCGAGTTTGA GTTTAACCGG CAGTGTGGGG
GAGTCGACCT CAGAGTTAAA AGAATTATTG CGCAATCCAG TTGGTAGTTT AGGTGCAGGC
TTAGTGTTGC CATTTTTACA GTGGAATCAA ATGCAAATTA ATAACGACAT TGCTGAAATT
GATTATCAAA CTGCAGTCGT AAATTACCGT AAGACACTGT ATTCCGCCTT TGAGGATGTT
GATAATGCCA TCTCGGCTAA GCAGCAATTT GCTTATCAAG GAGACAAATT ACAGCAACAG
TATAATGCTG CGGTAGCGGT CGAGGCCATT TATGAAAGCC AGTATCGCCA TGGTGCGATA
GGTATTCAAG ATTGGATTAA TGCCCAAGAA AATCGACGTG CAGCGGAGGC GTCTTTGCTC
GAAAACCGCT ATAACCAACT GACGGCCCAA GCAACGCTCT ACCAAGCCCT TGGTGGGAGC
GATATCGCCC CAGAGATTGC TCAGATTTCT AACTAA
|
|---|
| Protein sequence | MNNLILNRKI MLRTCAIAVG VALLGGCGSF MRSDFEPLAL TIPSHWQHTQ VNEQVRVDPW
WQQFQQPDLN KLVSQVLSSN NDLALATLTL RKARLQAGLA QDALYPQLSS NLSASRSNPL
DGGESTKSYQ AKLSVSYEVD LWGKVSAEMD QAQWSALASA EDRESTTQSL VATTASLYWK
MGYLNQRIAL SSRSIDHSRQ TLALTQRQYA SGAVTQVNVL EAKRSLAGQE ASHSQLIQQL
TEAGNALAIL LNQTPGEAFV EINALPDVAV PEIAVGMPAD LLVRRPDVKA SLYQLRSALA
SKDATYTRYF PSLSLTGSVG ESTSELKELL RNPVGSLGAG LVLPFLQWNQ MQINNDIAEI
DYQTAVVNYR KTLYSAFEDV DNAISAKQQF AYQGDKLQQQ YNAAVAVEAI YESQYRHGAI
GIQDWINAQE NRRAAEASLL ENRYNQLTAQ ATLYQALGGS DIAPEIAQIS N
|
|---|
| |