| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3120 |
|---|
| Symbol | |
|---|
| ID | 5078464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3626874 |
|---|
| End bp | 3628541 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640500317 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_001184631 |
|---|
| Protein GI | 146294207 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGGCAT TAAACGCAAA TAATCAAAAT GTTACCCGTA GCACTGGAGC GCTCAAGTTG
GCAATCATCG ATCCCATAGT GAATGGTTTA AATTCAGGTT GGCAGCATAT AGATGCGAGC
CTATTGCAGG CAAACCAGCA ATTTGAAGCC GATGTGATTA TTGTTGGCAC GGGTGCTGGG
GGCGGTGTCG CGGCTGAAAT TCTTACCCAA GCAGGACTGA GTGTCATCAT GGTTGAAGCG
GGGCCGCTTA AATCTTCCAG TGATTTTGAT ATGGAAGAGC GCGTCGCTTA CCCGAATTTA
TATCAACAAG CGGCCGCCAT GAAAACCGCC GACAAAGCGA TTGGTATCTT CCAAGGCCGC
GCCGTTGGCG GTTCGACAAC GGTAAATTGG ACGACCTCGA TTCGTACTCC GGCTGAGACG
TTAGCCTTTT GGGAGCAAAA TAAGTCCGTC GCTGGATTAA CATCAGAAAG CTTAGCCCCT
TGGTTTGAGC AAATGGAGCA GCGCCTAAAT ATCCACCAAT GGAATTATGA ACCTAATCGC
AATAATGCAG CGTTAAAGCA AGGCTGCATT AATCTTGGTT GGGATTACAC TGTGATTAAG
CGTAATGTAG CGGGTTGCTG GAATACCGGT TATTGCGGTA TGGGTTGCCC AGTGAATGCC
AAGCAATCTA TGTTAGTGAC CACCATTCCC GCGGCGCTAG ATAAAGGTGC ACAGTTGGTA
AGTCGCGCAA AAGTGGTGAA CATTGAGCAT CATAACGGTC ATGTTTTTGC ATTAAAGGCA
CAGGCACTTG ATGTGAACTT AAGGCCAACC GCCATTGAGT TGTTATTTAA GGCCAAACAT
TACATCTTGA GTGCTGGCGC CATTCATACT CCAGCGCTTT TAATGCGTTC TCAAGTGCCC
GATCCCCACA AGCTTTTGGG TAAACGCACC TTTTTACATC CAACTTTGCT CTCTGGTGGC
GTGTTTGCCG ATGCGATTAA TGCTCACAGT GGTGCACCGC AATCCATTTA TTCCGATGAG
TTTGTTTGGA AAAATGGTGC AGAGGGGGAG CTGGGTTATA AGCTCGAAGT ACCGCCTGTA
CATCCCATAC TCATTGCCTC TAAAACCTTA GGTTATGGCA TGAGCCACGC TGAGCTAATG
TCACAATTTA ATCAATTACA GGTGACTATC GCCCTTGTGC GTGATGGGTA TCATCCCGAG
AGTCAGGGGG GGCAAGTGCA TTTAACATCA ACAGGTTTTG CCTTAGATTA TCCTCTGACC
GATATTTTTT GGCGTGCGGC GAGACGCGCC TTTGCCAGTA TGGCCGAGTT ACAATTCTCT
GCGGGCGCGT TAAGAGTGTT ACCGATTAGC GATGGTATGC CCTATTTGTC TTCATGGAAA
GAGGCCAAAG AAAGCATTGC CCAGATGTCG CTCGCGCCAC TGCGCACTGT GGTGGCATCG
GCCCATGTGA TGGGAGGATG TCCCTTGGGT GAAGATAAAA AACTTGCGAT GGTTGACAGT
GATGGACAGT CACATTATTT AGAAAACTTG TCGGTAATGG ATGGTTCTAT CTTTCCGACG
AGCCTAGGTG CTAATCCACA ATTGTCGATT TATGGTATTA CGGCACGTAA TGCGAGCAAA
CTAGCAGAGA GACTCGCGGC AAAACTCAGT GTAGGGGACA AGGTTTAG
|
|---|
| Protein sequence | MLALNANNQN VTRSTGALKL AIIDPIVNGL NSGWQHIDAS LLQANQQFEA DVIIVGTGAG
GGVAAEILTQ AGLSVIMVEA GPLKSSSDFD MEERVAYPNL YQQAAAMKTA DKAIGIFQGR
AVGGSTTVNW TTSIRTPAET LAFWEQNKSV AGLTSESLAP WFEQMEQRLN IHQWNYEPNR
NNAALKQGCI NLGWDYTVIK RNVAGCWNTG YCGMGCPVNA KQSMLVTTIP AALDKGAQLV
SRAKVVNIEH HNGHVFALKA QALDVNLRPT AIELLFKAKH YILSAGAIHT PALLMRSQVP
DPHKLLGKRT FLHPTLLSGG VFADAINAHS GAPQSIYSDE FVWKNGAEGE LGYKLEVPPV
HPILIASKTL GYGMSHAELM SQFNQLQVTI ALVRDGYHPE SQGGQVHLTS TGFALDYPLT
DIFWRAARRA FASMAELQFS AGALRVLPIS DGMPYLSSWK EAKESIAQMS LAPLRTVVAS
AHVMGGCPLG EDKKLAMVDS DGQSHYLENL SVMDGSIFPT SLGANPQLSI YGITARNASK
LAERLAAKLS VGDKV
|
|---|
| |