| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3089 |
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| Symbol | |
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| ID | 5079729 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 3590805 |
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| End bp | 3592529 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640500287 |
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| Product | spermidine synthase |
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| Protein accession | YP_001184601 |
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| Protein GI | 146294177 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.170369 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGAAA ACAGTTTAGC TCCCTTAGCG GCTAAACCTA GCCGCTTAGG TTGGTTTGAC
GATGTCCTAT TATTGGGCAT TATGGCCGTA TTAGCAGGCT GCGGCCTGAT TTACGAATAT
CTACTGTCAC ATTATGCGGG GCGTATTTTA GGTGCATTAG AAGCGGCCAT CTACACTATG
ATTGGCTTGA TGATCGTTTC TATGGGATTG GGGGCCTTTG CTGCACGTAA AATCCGAGAT
GCCTTTACCG GTTTTGTCAT ATTAGAACTC ACCGTCGCAC TTTGTGGCTC ACTCGCCATT
TTAATCACCG CGGCGGTGAT TGGTTTTGGT CAACAACTGC CTTTAATCAT TGCAAGTACA
TTAGGGTTAC CACCGGATCA ATTACCGGAT GGCGGTGTGA TAGGTACGCT GCAAAAACTC
AGTGAATACT TACCCTATAT GTGGGGTGTG TTGCTAGGCT TGATGATTGG TATGGAAATC
CCCCTTATCG CAAGGGTACG CCAATCCCTT TCTGATGAAC ATTTGCTCCA TAATGCTGGC
ACTATTTATG GTGCTGATTA CATAGGTGCA GGCATAGGTG CCGCCATTTG GGTGGGTTTT
ATGCTTGCCA TTGATATTCA GCTCGCCGCC GCCTTAACCG CCAGTTTTAA CCTATTAGCG
GGTTTTGTGT TTATCTGGCG ATTCTGGCCG AAAATCCGCC AAGCTAAACT GCTGTTAATC
GGGCATCTTG TTGTCACAGG CGTCTTGTTG GTGTTAGCGA TACACGGCCC ACGCTGGGAG
CAAGAATTTA ACAATCTGCT TTATAAAGAT AAAGTGGTTT ATAGCAAGGC AACTCGATTC
CAACAACTGA CGTTTACTGA ACGCCTACGG GGTAATGGAT TAGCACCTGT ATATGCTTTA
TATATCAATG GCCGTTTACA ATTTTCGAGC ATAGATGAGC ACATCTACCA TACATTTCTC
GTGCATCCCA CACTCGCCGC CAGTGCCCGC CATAACAAAG TACTCATTAT TGGCGGTGGT
GACGGGCTTG GATTAAAACA GGTACTGCGT TGGCAACCGG AACAGGTTAC CCTACTCGAT
CTTGATGCTG ATCTGGTTAA GTTATTTAAG TCACCCGATA CAGATATGCC TGAAAATTTA
ACTCAAGCTA TGCTGGCATT AAATGGCGAC GCACTGAATG ATCCCCGTGT CACAATCATC
AATGATGATG CCTTTAACGG CGTCGATAAA CTAATTGCCA CAGGCGTGAA ATACGATGCC
ATTATTGTGG ACTTACCCGA CCCGAGCCAC CCCGATCTCA ATAAGCTGTA CTCAGATTAT
TTCTACCGTA AATTAAAGGA ACTAATGAGC AGTGATGGCG CACTGACTGT ACAGTCAACC
TCGCCTTATC ATGCTCCTAA GGCCTTTATT TCAGTGGCAA AAACCTTAGT TGTAGCTGGA
TTTGACGTTA AGCAATATCA CCATAATGTC CCCAGCTTTG GCGAATGGGG ATGGAGCATT
GCTACCGCTG GTGGACGGGA TGCACAGTAC AGGCTTGCGC AGTTAACGGA ATTCCCTATC
AAAGATGATT GGCTCACATT AGGACTTGTG AAGGGCGCAT TTGAGTTTCC AGCTAACTTT
TATCTGGATG CTGTCAATAT AAAACCCAAT GAATTAGGCT CATTACAGTT GTACCACTAC
CATTTACAGG CTTGGTCTGA AAACCAAGGA ATCGATCTTT TTTAA
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| Protein sequence | MQENSLAPLA AKPSRLGWFD DVLLLGIMAV LAGCGLIYEY LLSHYAGRIL GALEAAIYTM
IGLMIVSMGL GAFAARKIRD AFTGFVILEL TVALCGSLAI LITAAVIGFG QQLPLIIAST
LGLPPDQLPD GGVIGTLQKL SEYLPYMWGV LLGLMIGMEI PLIARVRQSL SDEHLLHNAG
TIYGADYIGA GIGAAIWVGF MLAIDIQLAA ALTASFNLLA GFVFIWRFWP KIRQAKLLLI
GHLVVTGVLL VLAIHGPRWE QEFNNLLYKD KVVYSKATRF QQLTFTERLR GNGLAPVYAL
YINGRLQFSS IDEHIYHTFL VHPTLAASAR HNKVLIIGGG DGLGLKQVLR WQPEQVTLLD
LDADLVKLFK SPDTDMPENL TQAMLALNGD ALNDPRVTII NDDAFNGVDK LIATGVKYDA
IIVDLPDPSH PDLNKLYSDY FYRKLKELMS SDGALTVQST SPYHAPKAFI SVAKTLVVAG
FDVKQYHHNV PSFGEWGWSI ATAGGRDAQY RLAQLTEFPI KDDWLTLGLV KGAFEFPANF
YLDAVNIKPN ELGSLQLYHY HLQAWSENQG IDLF
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