| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_3049 |
|---|
| Symbol | lysS |
|---|
| ID | 5079791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3532061 |
|---|
| End bp | 3533563 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640500247 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_001184561 |
|---|
| Protein GI | 146294137 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAC AAGTACAAGA TGAAAACAAA CTGATCGCCG AGCGTCGTGC CAAGCTAGAC
AGCATTCGCC CGAATTGTAG CGCTAATGCT CACCCTAATA CGTTCCGTCG CACCCACAAA
GCGGCAGAGT TGCAGGAAAA ATACGGTCAA AACACTAAGG AAGAACTCGA AGCCTTAGGT
TTTAGAACCA GCATTGCTGG TCGTATCATG GCAAAACGTG GCCCATTCCT CGTAATTCAA
GACGTGTCTG GTCGTATCCA AGCTTACGCT GAAAAGGGCG TTCAAGCGGA TCTGAAGGAT
CGTTACCAAG GTCTGGATAT CGGTGACATC ATCGGCGTAA CTGGTCAGTT GCACTTGTCT
GGTAAAGGCG ATCTGTACGT CAATATGGAA GAGTACCAAC TGCTGACCAA AGCACTGCGT
CCACTGCCAG AGAAATTCCA CGGCTTAACC GACCAAGAAA CCCGTTACCG CCAACGTTAT
GTTGACTTAA TCGTTAACGA AGAATCTCGT CAAGCCTTCG TGATGCGCTC AAAAGTGGTT
GCAGCTATCC GTAACTTCAT GATCAAAAAA GAGTTCATGG AAGTTGAAAC CCCAATGATG
CACGTGATCC CAGGCGGTGC TTCAGCCCGT CCATTTATCA CGCACCACAA TGCGCTGGAC
ATGCCAATGT ACCTGCGTAT CGCGCCAGAG CTATACCTCA AGCGTTTAGT GGTCGGTGGT
TTTGAGCGTG TGTTCGAAAT CAACCGTAAC TTCCGTAACG AAGGTCTGTC GCCACGCCAT
AACCCAGAAT TCACTATGAT GGAATTCTAT ATGGCTTACG CTGATTACAA AGATCTGATG
GACTTAACCG AAGAACTGTT AAGCTCAATC GCGATTGAAT TGTTAGGCAG TGCGCAAATG
CCATACGGCG AGCACACCGT TGATTTCGGC GGCCCATATG CCCGTCTGAG CATGTTAGAA
GCGATTCAGA AGTACAATCC TGATAACGCG ACTATCCAAG CCATGACCTA CGAGCAAGTG
AAAGATCTTG AATTTATGCG TGAATTGGCT ATCAGCCTAG GTATCAAGAT CGAGAAGTTC
TGGACCTGTG GTCAGCTATT AGAAGAAATC TTCGGTGAAA CTGCTGAATG GCAATTAATG
CAACCGACCT TCATCACTGG CTACCCAGCG GACATTTCGC CACTGGCACG TCGTAACGAT
GACAATCACT TCATCACCGA CCGTTTTGAA TTCTTCATCG GTGGTCGTGA AGTAGCTAAC
GGTTTCAGCG AGTTAAATGA TGCTGAAGAT CAAGACAGCC GCTTTAAAGC GCAGGTTGAT
GCCAAAGACG CGGGTGACGA TGAAGCCATG TTCTACGATG CGGACTATAT CACTGCACTG
GAACACGGTT TACCACCAAC AGCGGGTCAA GGTATTGGTA TCGACCGTTT AGTGATGCTA
TTCACTAACA CTCATACAAT CCGTGATGTG ATCCTATTCC CTGCAATGCG CCCACAAGCC
TAA
|
|---|
| Protein sequence | MTEQVQDENK LIAERRAKLD SIRPNCSANA HPNTFRRTHK AAELQEKYGQ NTKEELEALG
FRTSIAGRIM AKRGPFLVIQ DVSGRIQAYA EKGVQADLKD RYQGLDIGDI IGVTGQLHLS
GKGDLYVNME EYQLLTKALR PLPEKFHGLT DQETRYRQRY VDLIVNEESR QAFVMRSKVV
AAIRNFMIKK EFMEVETPMM HVIPGGASAR PFITHHNALD MPMYLRIAPE LYLKRLVVGG
FERVFEINRN FRNEGLSPRH NPEFTMMEFY MAYADYKDLM DLTEELLSSI AIELLGSAQM
PYGEHTVDFG GPYARLSMLE AIQKYNPDNA TIQAMTYEQV KDLEFMRELA ISLGIKIEKF
WTCGQLLEEI FGETAEWQLM QPTFITGYPA DISPLARRND DNHFITDRFE FFIGGREVAN
GFSELNDAED QDSRFKAQVD AKDAGDDEAM FYDADYITAL EHGLPPTAGQ GIGIDRLVML
FTNTHTIRDV ILFPAMRPQA
|
|---|
| |