Gene Sputcn32_3018 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_3018 
Symbol 
ID5079760 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp3499767 
End bp3501194 
Gene Length1428 bp 
Protein Length475 aa 
Translation table11 
GC content41% 
IMG OID640500216 
Productdiguanylate cyclase with PAS/PAC sensor 
Protein accessionYP_001184530 
Protein GI146294106 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain
[COG2202] FOG: PAS/PAC domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAATAATG ATGAATACAC TTCCCTAAGT CAGTTTATTG ATCTGCTGTT GGATGCGATC 
TGTGTTGTCG ATAAAACGGG GCGGTTTGAA TTTGTTAGTG CAGGAGCAGA ACGAATTTTT
GGTTACACCC CAGAAGAAAT GATTGGTATG CAGATGCTAG AGCTTGTATT ACCTGAAGAT
AGAGAGCGCA CGTTAGCGAC AGCTAAAGAA ATTATGGATG GTCGTTTTAA GGTTGACTTT
GAAAATCGCT ATGTGCGAAA AGATGGTTCA ATAGTCGATA TTCTTTGGTC TGCTCGTTGG
TCAGAGGACC ATCAGCAGCG TGTCGCTGTT GCTCGAGATA TTACGAAGAG AAAAAATGCC
GAGCGTAGAC AGGCGGCCTT GTATGAAATC TCAGAAGCTG TGCATGTGAC AGAGGATTTA
CTGGCACTAT ACCAACATAT TCACCAAATT ATGGCAAAGT TACTCCCAGC AGAGAATTTT
GCTATTGCAC TTTATGATCT AGATTTACAA GAGCTTAGTT TTCCGTATCG GGTTAGCACC
CAAGAAAACT CGGCTGTAGA CATCGAAAGT TTTCGCGTAT TTACTGAACA AGTGATCCAA
AATGCAGAAT CGATATTACT TTGCCCTATT AGCTTAAACG AGTATCCAAA AGGCGCCGCA
GCCGAGTTAG GTAATAGCCG TTTAAGCTGG CTTGGCGTAC CGCTTAAGTT ACAAAAAGGG
GTTATTGGTG CGTTAATGAT GCATACCGAC CCGACTTCTG CACCTTATAC ATATCAAGAT
TATGAGTTAG TTGAGTTTGT TTCAACCCAA ATAGCCTTTG CTATTGAACG TCGACAAATG
CTAGCTCGCC TAGAGCATAT TGCTTTGTAT GATCAATTAA CTCAATTACC GAATCGAGCG
TTGTTTTACG ATAGGTTCCA AAAAGCCCTA TCTCGGGCTC ATCGGGAAGG GAGTTATTTT
TCCTTACTGT ATTTGGATCT TGATAAGTTT AAGTGGGTAA ATGATACCTA TGGACACAGT
GTTGGGGATT TATTACTGCA AGTGACAGCG CAGCGTATAC TTGGCTGTGT GAGAGCCTCT
GATACAGTTG CCCGTTTTGG TGGCGATGAA TTTGTGATTT TACTCGAACG AGTTGATTCT
GCTAAAAATA CCTTAGTAAC GGCTCAAAAG ATTTTACAAG TACTTAATCA ACCCTTTGAG
CTTATTGATC AGCAAGTTCA AATATTACCT AGCATCGGCA TTGCTATGTA TCCGGAACAT
GGTATCGATG AGAAACAACT GATTTCCTGT GCAGATACGG CTATGTATAA GGCCAAAAAG
AACGGTGGTA ATCGTATTGA GATGGGATAT CAAGGTTTAA GATCTATCTT TGTTGATACG
ATACTGCCGC TCGAGCTACA CCCCACTAAT GCTAAAAAAG TCATTTAA
 
Protein sequence
MNNDEYTSLS QFIDLLLDAI CVVDKTGRFE FVSAGAERIF GYTPEEMIGM QMLELVLPED 
RERTLATAKE IMDGRFKVDF ENRYVRKDGS IVDILWSARW SEDHQQRVAV ARDITKRKNA
ERRQAALYEI SEAVHVTEDL LALYQHIHQI MAKLLPAENF AIALYDLDLQ ELSFPYRVST
QENSAVDIES FRVFTEQVIQ NAESILLCPI SLNEYPKGAA AELGNSRLSW LGVPLKLQKG
VIGALMMHTD PTSAPYTYQD YELVEFVSTQ IAFAIERRQM LARLEHIALY DQLTQLPNRA
LFYDRFQKAL SRAHREGSYF SLLYLDLDKF KWVNDTYGHS VGDLLLQVTA QRILGCVRAS
DTVARFGGDE FVILLERVDS AKNTLVTAQK ILQVLNQPFE LIDQQVQILP SIGIAMYPEH
GIDEKQLISC ADTAMYKAKK NGGNRIEMGY QGLRSIFVDT ILPLELHPTN AKKVI