Gene Sputcn32_3009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_3009 
Symbol 
ID5079904 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp3486776 
End bp3489406 
Gene Length2631 bp 
Protein Length876 aa 
Translation table11 
GC content44% 
IMG OID640500207 
Productendonuclease/exonuclease/phosphatase 
Protein accessionYP_001184521 
Protein GI146294097 
COG category[R] General function prediction only 
COG ID[COG2374] Predicted extracellular nuclease 
TIGRFAM ID[TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00148055 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATAATG TTAATAAATT AACGGCTATT TCTTTAGCTG TTGCAGCCGC TTTGCCTATG 
ATGGCAAGTG CTGAAGTGAT GATTACAGAG TATGTAGAAG GTAGCTCTAA TAATAAGGCG
ATTGAAATTT ATAACAGCGG TGATACTGCG ATTGATTTGG CAGGTTATAA ACTGGTTCGT
TATAAAGATG GTGCAACTGA TGCAACCGAT ATGGTGGCCT TAGATGGTCA AACCATTGCG
GCAAAATCGA CAAAAGTTAT TTTAAATACT AGCGGTACTA TTACTGTTGC TCAAGGCGTT
GATAGCTTCT CTGGTAGTTT AAGCTTTAAT GGTGGTGATG CGGTTGCTTT AATGAAAGAT
GGCGCCGTTG TCGATATTAT TGGCGATGTG CCAACGCCAA CGGGGTGGGG GCTTGATGTT
ACACTACAAC GTAAACTCGA TGCCCTCGTT GCCAATACCG TATTTAATGC CGCGCAATGG
GAACTCTTAC CCAAAGATAC TTTTACCGGT TTAGGATCCT TAGAAAAACC CGCAGAACCT
GAAGCTCCGG TGTTTAGCTG CAGTGGCGCT AAAATTGTGC CTATTTATCA AGTACAAGGC
GCGGGTGAGT CGAGTCCACT TGTGCCTGTT GGGGCATTTG AATCTGAAAC TGAAGTGACA
GTACGTGGTG TTGTTACTGC CCGTGGTGAA AGTTTATTTA AAGGTTTCTA TCTTCAAGAA
ATTAAAGGCG ATAACTCACC CTATACCTCT GATGGTGTAT TTGTCTTCCT CGGTGAAGCG
GCACCAGAAG CAATCCAACC AGGGGTTGAA GTCTGTGTGC AAGGTAAGGT TAAAGAGTAT
TTTGGCTTAA CCCAAATCGA CATTAAAACG GATAAAAAAT TTGAGGTTGG TGCTAAGGTC
GGTATCCCTG CTGCGGCACC TTTCTATGTT GCCGATGGTG AAACACTGGC TCAAGCCTTA
GAGCGTTACG AAGGCATGAA TGTGGTTTTA GATGCGGGTA GCGATCTTAA GATCAGCCGT
ACCTTCAGCT TTGACTATGC GAGTAGCCGT AACAATATGT TAGTTTCATA TAAAGCACCT
TTAATGAAAC CAACACAGCT ATATCCAGCA CTTTCCCCTG AAGCAATAGC ACTGGCGAAA
TCAAACCTCG ACAATCAGCT TTTTATCGAG TCGGATTATA AACCCGCTAA TGGCGTGATC
CCATATTTCC CTGATTTTAA CGTGGAAACA GGTTATATCC GTGTAGGCGA TCAACTGACT
AATTTGCAAG GTGTCATTGG CTATAGCTAT GGGGCTTATC GATTAGTTGC CACTAACACG
ATTACCGCAG GTGATTTTAT CCGTGGTGAC GATAGAACTG ACGCACCAAG TGTGGCAACA
AAAGGGGATA TTCGCGTAGC CAGTTTCAAC GTCTTAAACT TCTTTAATGA TGTTGTGGGT
GGTGATACAA ATCCTTCAGG CAGTAACCGT GGCGCGCTAA CTGAAGAAGA AATGCTGTTA
CAACGCACTA AAATTGTGAG TGCAATTACT GCCATGAATG CCGATATCGT TGGTTTAATG
GAAATTGCTA ATAACGGTTT TGGTGAGAAA AGCGCACTTA AAAACTTAGT CGACGCACTG
AACGAGAAGC AAACAGCGGA TAATGCTTAT AGTTTTATCG AATTGGCTGA TGCTGATAAG
TACGATGGTA AGTATTTTGG TAGCGATGCC ATTACTGTGG GTATGCTTTA TCGTGCGGGT
AAAGTCACTC TAGAAGGGGC TGCTCGCGTT ATCGAGACAC CAGAGCAACA TGCAACGGCT
GGTAGCGTGA CTCGCACTAA AGCGGATAAG ACTGAGACAA ACCCTGGTAA CGATGCTTAT
CAACGCCACA GCTTAGCGCA AACCTTTAAG ATCCATAATG AGCCATTAAC TGTGGTGGTG
AATCATCTAA AATCAAAAGG TTCGGGCTGT TTAGAAGATT GGGTTAATTT TGAAGAATCT
GTCGATCCTG CCGATCAACA GGGGAAATGT AACGCTTTCC GTGTTTCTGC GGCCAAAGTA
TTAGGTGAAG CGTTAAAAGA TGTGAAAGGC GATCTACTGG TTATCGGCGA TATGAATGCT
TACGGTATGG AAGATCCTAT CCGTGTGCTG ACCGATTTTG ATGCCAGTAA ATCAGAGCGT
GACATAGTCA CAGCTTCATG GACCACTCTG GGTGGTAAGG TGTATGAGCG TCAAGGGAGT
AAGATTGATA AGGGCTATGG TCTTATCAAC TTAAATACCC AAGCCCACGG TGTGGCGACT
TACTCTTATA GTTACAATGG CGAATTAGGT AATTTAGACC ACGCCTTAGC CAATACAAGC
CTCGCTAAAC GCTTAGTGGA TATTGAAGAT TGGCATATTA ACTCAGTTGA ATCTAACCTG
TTTGAATACG GTAAGAAATA TTCAGGTAAT TTAGCTAAAT CTGAAAATGC CTTTTCAGCA
TCGGATCATG ATCCTGTGAT TATCGCCTTA AGCTATCCAG CGCCAGTTGT GCCTCCAACG
CCGGAACCAG AACCCGCGCC TCAGCCTAAG CATGATGGTG GAGCGCTAGG CTACTTAGCT
TTGGCTTTAG TATCGTTATT CGGATTACAA CGCCGTCGCC GTTCAGTTTA G
 
Protein sequence
MDNVNKLTAI SLAVAAALPM MASAEVMITE YVEGSSNNKA IEIYNSGDTA IDLAGYKLVR 
YKDGATDATD MVALDGQTIA AKSTKVILNT SGTITVAQGV DSFSGSLSFN GGDAVALMKD
GAVVDIIGDV PTPTGWGLDV TLQRKLDALV ANTVFNAAQW ELLPKDTFTG LGSLEKPAEP
EAPVFSCSGA KIVPIYQVQG AGESSPLVPV GAFESETEVT VRGVVTARGE SLFKGFYLQE
IKGDNSPYTS DGVFVFLGEA APEAIQPGVE VCVQGKVKEY FGLTQIDIKT DKKFEVGAKV
GIPAAAPFYV ADGETLAQAL ERYEGMNVVL DAGSDLKISR TFSFDYASSR NNMLVSYKAP
LMKPTQLYPA LSPEAIALAK SNLDNQLFIE SDYKPANGVI PYFPDFNVET GYIRVGDQLT
NLQGVIGYSY GAYRLVATNT ITAGDFIRGD DRTDAPSVAT KGDIRVASFN VLNFFNDVVG
GDTNPSGSNR GALTEEEMLL QRTKIVSAIT AMNADIVGLM EIANNGFGEK SALKNLVDAL
NEKQTADNAY SFIELADADK YDGKYFGSDA ITVGMLYRAG KVTLEGAARV IETPEQHATA
GSVTRTKADK TETNPGNDAY QRHSLAQTFK IHNEPLTVVV NHLKSKGSGC LEDWVNFEES
VDPADQQGKC NAFRVSAAKV LGEALKDVKG DLLVIGDMNA YGMEDPIRVL TDFDASKSER
DIVTASWTTL GGKVYERQGS KIDKGYGLIN LNTQAHGVAT YSYSYNGELG NLDHALANTS
LAKRLVDIED WHINSVESNL FEYGKKYSGN LAKSENAFSA SDHDPVIIAL SYPAPVVPPT
PEPEPAPQPK HDGGALGYLA LALVSLFGLQ RRRRSV