| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2962 |
|---|
| Symbol | |
|---|
| ID | 5079857 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3433427 |
|---|
| End bp | 3434554 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640500162 |
|---|
| Product | transport system permease protein |
|---|
| Protein accession | YP_001184476 |
|---|
| Protein GI | 146294052 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0609] ABC-type Fe3+-siderophore transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAGGA ATAAACAACA TTTCATCTCA TATTTGGGGC GTATTGTGAC ACCGTTGACG
AGACAACAAC TGATGCTGCT TGTATTGGGC ATCATCACTT TGGTCACCCC TATTGCTGCG
GCGAGCTTTG GTGCGGCAAA TATCCGCTTT ATAGAAGTTA TTCAAGTGTT TACAAATAAT
GTGGTGAATC CTGTTCAAGC CAATGGTATG ACTGAGCGCA TTGTGATGGA ACTAAGACTG
CCGCGCATTT TACTGGCTTT TGTGGCGGGG GCGGGTTTGT CAATGGCGGG GAGTGTGTTG
CAAACCGTGA CCCGTAATCC GCTCGCCGAT CCCTATTTGT TTGGCATTAG CTCTGGCGCG
TCCTTTGGCG CTGTGGTGAT GTTGACGATT TTTACCGGTT CTGGTTTATT TGAACATTCA
GCATTAATTG CAAGCTCAGG TATTTTTAGC GGCTCGGGTG CTTTTGCTGG GCTGCTCTGG
TTTAGCTTAC CCTTTGGCGC TTTTATCGGT GCGAGCTTAT CTGTGTTAAT TGTGCTTGCC
TTGTCTGGGC TTGGGCTTAA TAGCCAAGTG GAGCGCATGT TGCTTTCTGG TGTGGCAACC
TCCTTTATGT TTGGCGCATT AACGAGTCTG CTGCTGTATT TTGCCAGTCC ACAGGCCACG
GCATCAGTGC TCTTTTGGAG TTTAGGCAGT TTCGCTAAGG CCAGTTGGTC GTTGCTAGTG
CTGCCGAGTT TAGTGATAGG CGTGAGTCTG GTGATTATTT TAGGGATGAA GCGCCAGATC
ATGGCGTTGC AAGCAGGGGA CGAAACCGCC CATACCTTAG GGGTGAATGT GCCTAAGCTG
CGGCTCAATA TGTTGCTGCT TTGCTCCTTG ATTACCGCCG TATTGGTTGC CACCTGCGGC
GGCATTGGTT TTGTCGGTTT AATGATCCCC CACACAGTGC GGTTATTATT TCCTGGTCGT
CAATCAATAT TATTAACCGC GTTGGTGGGG GGGGTATTTT TGGTGTGGAT TGATGTCTTA
GCACGTTGTT TGTTGAGCAA TCAAGAGTTA CCCGTGGGTA TTATTACTGC CGCCATAGGG
AGTTTTTTCT TTTTGATTAT CCTGCGGCGG CGAAAAGTAA CCCGCTAA
|
|---|
| Protein sequence | MSRNKQHFIS YLGRIVTPLT RQQLMLLVLG IITLVTPIAA ASFGAANIRF IEVIQVFTNN
VVNPVQANGM TERIVMELRL PRILLAFVAG AGLSMAGSVL QTVTRNPLAD PYLFGISSGA
SFGAVVMLTI FTGSGLFEHS ALIASSGIFS GSGAFAGLLW FSLPFGAFIG ASLSVLIVLA
LSGLGLNSQV ERMLLSGVAT SFMFGALTSL LLYFASPQAT ASVLFWSLGS FAKASWSLLV
LPSLVIGVSL VIILGMKRQI MALQAGDETA HTLGVNVPKL RLNMLLLCSL ITAVLVATCG
GIGFVGLMIP HTVRLLFPGR QSILLTALVG GVFLVWIDVL ARCLLSNQEL PVGIITAAIG
SFFFLIILRR RKVTR
|
|---|
| |