| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2844 |
|---|
| Symbol | secF |
|---|
| ID | 5078678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3304463 |
|---|
| End bp | 3305359 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640500040 |
|---|
| Product | preprotein translocase subunit SecF |
|---|
| Protein accession | YP_001184362 |
|---|
| Protein GI | 146293938 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000056416 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATA TCAATCTAAC GGGTCAATTA ACTCTGTGGC GCTATATTTC GAGCGCGATT
TCGATCTTTT TAATGCTGGC ATCGTTAACC ATTATCGGCG TGAAGGGCTT TAACTGGGGC
TTAGATTTTA CCGGTGGTGT GGTCACCGAA GTGCAGATCG ATAGAAAAAT TACCAGCAGT
GAGTTGCAAC CTTTACTCAA CGCTGCTTAT CAACAAGAGG TCAGTGTGGT TTCGGCCAGT
GAGCCGGGGC GTTGGGTGTT ACGTTATGCT GACACTGCAC AAAGCAATGT GGATATTGCG
CAAACCTTAG CGCCACTGGG CGAGATACAA GTGCTAAATA CCAGTATTGT TGGCCCGCAG
GTAGGTAAAG AATTGGCAGA GCAGGGTGGT TTAGCACTGC TAGTCGCTAT GCTGTGTATT
TTGGGGTACT TAAGTTATCG CTTCGAATGG CGGCTTGCTT CTGGTGCACT ATTCGCGTTA
GTGCATGATG TGATTTTTGT GCTTGCTTTC TTTGCGCTGA CGCAGATGGA GTTTAATTTA
ACTGTGCTCG CTGCTGTGCT GGCGATTTTA GGCTATTCCT TAAATGACTC GATTATCATT
GCTGATCGTA TTCGTGAGTT ATTAATTGCT AAGCCAAAAC TTGCGATTCA AGAGATTAAT
AATCAAGCGA TTGTGGCGAC GTTTTCCCGC ACTATGGTGA CATCAGGGAC CACCTTAATG
ACGGTTGGTG CACTGTGGAT CATGGGTGGT GGGCCGCTGG AGGGGTTTTC GATTGCCATG
TTTATCGGTA TTTTAACGGG AACATTCTCA TCTATTTCTG TTGGTACTTC ATTACCTGAA
CTGTTAGGTT TATCGCCAGA GCATTATAAG GTGCAAGTCA TTTCAGATAC GCCTTAA
|
|---|
| Protein sequence | MKNINLTGQL TLWRYISSAI SIFLMLASLT IIGVKGFNWG LDFTGGVVTE VQIDRKITSS
ELQPLLNAAY QQEVSVVSAS EPGRWVLRYA DTAQSNVDIA QTLAPLGEIQ VLNTSIVGPQ
VGKELAEQGG LALLVAMLCI LGYLSYRFEW RLASGALFAL VHDVIFVLAF FALTQMEFNL
TVLAAVLAIL GYSLNDSIII ADRIRELLIA KPKLAIQEIN NQAIVATFSR TMVTSGTTLM
TVGALWIMGG GPLEGFSIAM FIGILTGTFS SISVGTSLPE LLGLSPEHYK VQVISDTP
|
|---|
| |