| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2835 |
|---|
| Symbol | nusA |
|---|
| ID | 5078667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3295169 |
|---|
| End bp | 3296668 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640500029 |
|---|
| Product | transcription elongation factor NusA |
|---|
| Protein accession | YP_001184353 |
|---|
| Protein GI | 146293929 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0457826 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAG AGATCCTGCT AGTCGCTGAA GCGGTTTCAA ATGAAAAGGC CGTTCCACGC
GAGAAAATTT TTGAAGCGCT AGAGATCGCT CTGGCTACTG CAACCAAGAA AAAATACGAT
GGCGATATTG ATGTCCGCGT TGCGATTGAC CGCAAAACGG GTGGCTATGA GACATTCCGC
CGTTGGATGG TCGTTGATGA TCACGGTGAA GCCTTAGAAA ACCCATTTCG CGAGATTACG
CTTGAGGCGG CTCGTTATGA AAATCCGGAT ATTCAACCGG GTGAGTTTAT CGAAGACGAT
ATCGAGTCTG TTGTATTTGA CCGCATTACG ACTCAAACCG CCAAACAAGT GATCGTACAA
AAGGTACGTG AAGCTGAACG TGCTCAAGTG GTTGAGCAGT TCAGAGATAA AGAAGGCGAA
CTGATCACTG GCGTTGTGAA AAAAGCAACC CGTGAAAGTG TCGTGGTCGA TTTAGGCAAT
AATGCTGATG GCGTGCTGTT CCGTGAAGAT TTAATTTCAC GCGAATCTTT CCGCCCTGGT
GACCGTGTGC GTGCATTATT GTACTCAGTA CGTCCAGAAG CTCGCGGTGC ACAATTATTC
CTAAGCCGTA CTAAACCCGA AATGCTGATT GAGCTTTTCC GTGTTGAAGT ACCTGAAATC
GCTGATGAAT TGATCGAAGT CATGGGCGCA GCCCGTGATC CAGGCGCACG CGCTAAGATC
GCGGTTAAGT CGAATGATCG CCGTATCGAT CCTATCGGTG CGTGTGTTGG CATGCGCGGC
GCACGTGTAC AAGCAGTATC AAATGAACTG GGTGGCGAGC GTGTTGATAT CGTATTGTGG
GATGATAATC CAGCACAATA TGTGATCAAT GCCATGGCGC CAGCTGATGT AGCTTCTATC
ATCGTCGACG AAGATAACCA TTCAATGGAT ATCGCGGTTG AGGCTGATAG TTTGGCACAA
GCCATTGGAC GTAATGGCCA GAACGTACGT TTAGCAACTC AACTTACGGG TTGGGAACTG
AACGTAATGA CAGTGGAAGA CATGAATAAG AAACATCAGG CTGAAAGTGC CAAAGTGGTG
AGTCTGTTTA TTAATTCACT GGATGTCGAT GAAGATTTTG CACAAGTACT AGCGAATGAG
GGCTTTACGT CGCTTGAAGA GGTCGCTTAT GTACCTGTGT CTGAATTATT GGCGATAGAC
GGTTTCGACG AGGATCTCGT TGAAGCTTTA CGTGAACGTG CAAAAGCTGC GATCTCGACA
AGAGCGCTCG CATCTGAAGA AGCACTGGAT GGTGTGGAGC CAAGTGATGA GTTGTTAGCA
CTTGAAGGTG TTGAAAGACA CTTAGCCTAT GTTTTAGCAA GCAAAGGTAT TGTGACTCTA
GAAGACTTGG CTGAACAAGG CATTGATGAT TTGATCGAAA TTGAAGAATT GACAGAAGAA
AAAGCAGGTA CGCTCATCAT GGCTGCCCGC AACATCTGTT GGTTTGGCGA AGAAGCATAA
|
|---|
| Protein sequence | MNKEILLVAE AVSNEKAVPR EKIFEALEIA LATATKKKYD GDIDVRVAID RKTGGYETFR
RWMVVDDHGE ALENPFREIT LEAARYENPD IQPGEFIEDD IESVVFDRIT TQTAKQVIVQ
KVREAERAQV VEQFRDKEGE LITGVVKKAT RESVVVDLGN NADGVLFRED LISRESFRPG
DRVRALLYSV RPEARGAQLF LSRTKPEMLI ELFRVEVPEI ADELIEVMGA ARDPGARAKI
AVKSNDRRID PIGACVGMRG ARVQAVSNEL GGERVDIVLW DDNPAQYVIN AMAPADVASI
IVDEDNHSMD IAVEADSLAQ AIGRNGQNVR LATQLTGWEL NVMTVEDMNK KHQAESAKVV
SLFINSLDVD EDFAQVLANE GFTSLEEVAY VPVSELLAID GFDEDLVEAL RERAKAAIST
RALASEEALD GVEPSDELLA LEGVERHLAY VLASKGIVTL EDLAEQGIDD LIEIEELTEE
KAGTLIMAAR NICWFGEEA
|
|---|
| |