| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2830 |
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| Symbol | |
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| ID | 5078662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 3288509 |
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| End bp | 3290557 |
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| Gene Length | 2049 bp |
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| Protein Length | 682 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640500024 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001184348 |
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| Protein GI | 146293924 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0701966 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGGTC GCTTTAAATC CCTAACATGG AAGCAAACTA ACCTCGTTGT TTTTACTGCG
TTATTTTTTG CCATCGCTAT TTTTATAGTT GAAATAGCCC TTGTTGTATT ATCAACAAAA
CAGCAGCTCA CCACCACTCA ACAAGAATTA CTTAATTCAG TTGAGCAACC CGCGGCTAAT
GCGGTATGGG CTCTTGATGA CAACTTAGCG AGACAAACCC TAGAAGGCGC CATCAAAGTT
GAGCATGTTG GCTCTGCCGT TATCGAACTT GATGATGGTT CAATGTTTGT CTCTGTCAGC
AATACTAAAA GTAATAATTC TCAGACGTTT GTAACGCTGA GTAATAAACT CTTCGATGAA
TTAAAAGAAA TATCCCGACC TTTGTACCGC CCCTTCTATT TTGAAGGAAC ACAAAAACAA
CAGCTCATCG GTACACTGAC TCTTTTCTAT GATACTCAAG AGCTAACAGA CACTCTCTTT
TCACAACTCA AACTCGGTTT CTTCGCAACT TTGGCGCGAG CCCTCTTACT CACCCTCGTG
TTATCGGTTG TATTTCATCG TTTTCTAACC CAACCCATCG CGAGGATCAG TGAAGCTATT
GATAAAATTG ACCCCGACTC ACCGGATGAA AATCTGCTTC CAGTGTCCAA TGCACACAAA
GATGACGAGC TCGGTTTAGT GACGTCAAAA TTTAATCAGA TCCTTATTCA ATTTAGTCAA
ACGCAATCAA AACTACGTAA GATGGCAACA AGAGATCCGC TCACAGGACT GCCAAACCGT
ACACTATTAC TCGAAACGAT TGCCGTTACT ATCCAACGGT CGCGTGTACA CAAACGTAGC
TTTGCACTCA TGTTTATCGA TTTAGATCGT TTTAAAAATA TTAATGACTC TCTCGGTCAT
GCACTCGGCG ATCAATTTTT AGCTCGTATT GCACGCATTC TTGAGCGTGT TGTCGGTGAT
AAGGGAACGG TGTCACGCCT AGGTGGCGAT GAATTTGTTA TTTTAGCCGA TGCCGTACAT
TCACCCGACC AAGCTGCCGA CTTTGTCGAT AAACTTCTTG TGCAACTTAA TGTGCCCATT
CAATTGAATG AACATGCGAT TCACCCAGCG GCATCCATTG GCATTTCAAT TTACCCCGAA
GATGGCAATA GTGCCGAAGA TCTAATCCGT CATGCCGATA TCGCCATGTA TAGTGCAAAA
GCGGCCGGTT CAAATCAATG GGCCTTTTTT AAACAGCAAA TGACAGAGCG TGCTGCGGTA
AGATTGCGCA CCGAGGCATC ACTACATGAT GCTTTAAAAA ATAATGAATT TCTGCTCTAT
TTCCAGCCTA AACTAGACCT ACAAACAGGT AAAGTCACTG GCTGTGAAGC CTTAATTCGT
TGGCAAAAAG ATGGGCGCTT GATTAGTCCT ATGTCATTTA TTCCTGTTGC AGAAGAAACA
GGGATCATTA TTCCTATTGG CCGCTGGGTG ATAGAGCAAA GCTGTAAAAC ATTAAGGGAA
TGGCAAAAAA AGTATCACTT CGCGATCCCC ATCGCTATTA ATGTTGCATC ACAACAATTT
GCTGATGCAA GTTTAGTATC TGATATCAAA CAAATGGCGT TGCGCTACCA AATTCAACCA
GAGTTACTCG AAATTGAGAT TACAGAAACC TCATTAATGA ATGATATTGA GTTGGCCATC
AATAAGCTTG AGCAACTCAA GTCGGCAGGT TTTGGTATCG CCGTTGACGA TTTTGGCACA
GGTTATTCTT CGCTATCCTA TCTACGTCAT CTCCCCATCA CCACTATGAA AATCGACCGT
TGTTTTGTAT CCGATTTACC GGAAGACAGC GCAATTGCAT CGACAATTTT GATGTTAGGT
AAGCAACTTA ATCTGACCAT TGTGGCAGAA GGGATTGAAA ATGAATTACA GTTAGACTGG
CTTAAGGAAA ACCAATGTCA GATAGGCCAA GGGTTTTATT TTAGTCAGCC ATTACCGCAA
GCAGAATTTG AAACCTTATA TATCGCAAGC CAAACTGCAA CAATCACAAG TATCGACAGC
AGAGCATAG
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| Protein sequence | MTGRFKSLTW KQTNLVVFTA LFFAIAIFIV EIALVVLSTK QQLTTTQQEL LNSVEQPAAN
AVWALDDNLA RQTLEGAIKV EHVGSAVIEL DDGSMFVSVS NTKSNNSQTF VTLSNKLFDE
LKEISRPLYR PFYFEGTQKQ QLIGTLTLFY DTQELTDTLF SQLKLGFFAT LARALLLTLV
LSVVFHRFLT QPIARISEAI DKIDPDSPDE NLLPVSNAHK DDELGLVTSK FNQILIQFSQ
TQSKLRKMAT RDPLTGLPNR TLLLETIAVT IQRSRVHKRS FALMFIDLDR FKNINDSLGH
ALGDQFLARI ARILERVVGD KGTVSRLGGD EFVILADAVH SPDQAADFVD KLLVQLNVPI
QLNEHAIHPA ASIGISIYPE DGNSAEDLIR HADIAMYSAK AAGSNQWAFF KQQMTERAAV
RLRTEASLHD ALKNNEFLLY FQPKLDLQTG KVTGCEALIR WQKDGRLISP MSFIPVAEET
GIIIPIGRWV IEQSCKTLRE WQKKYHFAIP IAINVASQQF ADASLVSDIK QMALRYQIQP
ELLEIEITET SLMNDIELAI NKLEQLKSAG FGIAVDDFGT GYSSLSYLRH LPITTMKIDR
CFVSDLPEDS AIASTILMLG KQLNLTIVAE GIENELQLDW LKENQCQIGQ GFYFSQPLPQ
AEFETLYIAS QTATITSIDS RA
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