Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_2828 |
Symbol | |
ID | 5078660 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 3285117 |
End bp | 3286022 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640500022 |
Product | lipoprotein NlpI |
Protein accession | YP_001184346 |
Protein GI | 146293922 |
COG category | [R] General function prediction only |
COG ID | [COG4785] Lipoprotein NlpI, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.000420478 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTCTTA AAATTAGAAC CGCGGTTGTT GCTGTGCTGG CGGGTGCCAG CCTGATGTTG GCTGGATGTG CGACGACCAC TCAGTCCCCT TTAGATAACC ACAATGATCT TGAAGGCAAG TTAGTCGTAG CGCCTGTGAT GCCTGACTAT AAAGTCGAGG TCACACTCGC TAAGCTTAAT GAGATTTTAT CTGCCGTCGA ACTGACAAAT GAACAGAGAG CCAGATTTCA TTATGATCGC GGCGTAATAT ACGACAGTGT AGGTTTAAGG CTATTGGCGC GTATCGATTT TATGCAAGCA CTTAAACTGC AGCCAGATCT TGCTGACGCT TATAATTTTC TTGGTATTTA TTATACCCAA GAGGGCGAGT ATGACAGCGC CTATGAAGCT TTCGATGGCG TATTGGAACT TGCTCCTAAT TACGATTATG CCTATCTAAA CCGTGGGATA GCACTTTACT ATGGCGATCG AAATGCGCTT GCCATTAAAG ATATGCAAGC CTTTTATGCT GGTGATAATA AAGACGGTTA TCGTGCATTG TGGTTATATT TGATAGAGTC CAAAGATAAT CACGAACAAG CCAAACAGCG GTTATTAGAA AATCGTAAGA ATCTTGATAA CGGAGTATGG TCAACGGTTA TTGTCGATTA TTATTTAGGA CACAAGCGCC GTGATGATGT GTTTAATGCA GCCAAAGAAG GTTTAACTCA TCCAAAAGAA TATGCAGAGC GTTTATGTGA AGCGTATTTT TATCTTGCAA AAATGGCGAT AGAGCAAAAG CAATATCAAG ATGCAGCAAA TTACTTACGG CTTACACTCG CGACTAATAT CTATGATTTT GTTGAACACA GATATGCCCG TATTGAGCTA GCAAAAGTTA AAGGTTTGCT CGAAGACACA AAATAA
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Protein sequence | MSLKIRTAVV AVLAGASLML AGCATTTQSP LDNHNDLEGK LVVAPVMPDY KVEVTLAKLN EILSAVELTN EQRARFHYDR GVIYDSVGLR LLARIDFMQA LKLQPDLADA YNFLGIYYTQ EGEYDSAYEA FDGVLELAPN YDYAYLNRGI ALYYGDRNAL AIKDMQAFYA GDNKDGYRAL WLYLIESKDN HEQAKQRLLE NRKNLDNGVW STVIVDYYLG HKRRDDVFNA AKEGLTHPKE YAERLCEAYF YLAKMAIEQK QYQDAANYLR LTLATNIYDF VEHRYARIEL AKVKGLLEDT K
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