| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2827 |
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| Symbol | prfC |
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| ID | 5078659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 3283438 |
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| End bp | 3285018 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640500021 |
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| Product | peptide chain release factor 3 |
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| Protein accession | YP_001184345 |
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| Protein GI | 146293921 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG4108] Peptide chain release factor RF-3 |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000333993 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGGCA ATAAAGTAGA GGTGGATAAA CGTCGCACCT TCGCGATCAT ATCGCACCCC
GACGCGGGTA AAACAACCAT TACCGAGAAA GTGCTGTTAT TCGGAAACGC TTTACAAAAA
GCGGGTACGG TTAAAGGTAA AAAATCGGGT CAGCATGCAA AGTCTGACTG GATGGAAATG
GAGAAAGACC GCGGTATTTC GATTACTACG TCTGTCATGC AATTTCCCTA TGGTGGCGCC
CTCGTTAACC TACTCGATAC GCCTGGTCAC GAAGACTTCT CCGAAGATAC TTATCGTACT
TTGACTGCGG TTGACTCATG TCTGATGGTG ATCGACTCTG CAAAGGGTGT CGAAGACCGA
ACAATCAAGT TGATGGAAGT GACTCGTCTG CGTGATACGC CGATCGTGAC TTTTATGAAC
AAACTCGACC GTGATATCCG TGATCCTATC GATCTGATGG ATGAAGTCGA AAACGTACTG
AATATTGCCT GTGCTCCTAT TACTTGGCCT ATTGGCAGCG GTAAAGAATT TAAAGGCGTA
TACCATATTC TGCGTGATGA AGTCGTGTTG TATCAAAGCG GTATGGGTCA TACGATTCAA
GAACGTCGTG TGATTGAAGG CATTAATAAT CCAGATCTTG ATAAAGCGAT TGGTAGTTAT
GCTGCCGATT TACGTGATGA GATGGAATTA GTGCGCGGTG CGTCGAATGA GTTTGATCAT
GCGGCTTTCT TGAAAGGCGA ATTGACCCCC GTATTTTTTG GTACCGCTTT AGGTAACTTT
GGTGTTGATC ATATTCTTGA TGGCATTGTG GAATGGGCTC CTAAGCCATT ACCACGTGAA
AGTGACACTC GGGTGATCAT GCCTGATGAG GAAAAGTTCA CTGGGTTCGT GTTCAAGATC
CAAGCAAACA TGGATCCCAA ACACCGTGAC CGTGTTGCCT TTATGCGTGT CTGTTCAGGC
CGTTATGAAC AGGGTATGAA GATGCACCAT GTGCGTATTG GTAAAGATGT TAACGTCAGT
GATGCCTTGA CCTTTATGGC CGGCGATCGT GAGCGTGCCG AAGAAGCCTA TCCTGGGGAT
ATCATTGGCT TACATAACCA TGGCACCATT CGTATTGGTG ATACCTTTAC TCAAGGTGAG
AAATTCCGTT TTACAGGCGT ACCTAATTTC GCCCCTGAAA TGTTCCGCCG TATTCGTCTG
CGTGATCCAC TTAAGCAAAA ACAACTACTA AAAGGCTTAG TTCAGTTATC TGAAGAAGGT
GCTGTACAGG TATTCCGTCC TCTTGATACC AATGATTTAA TTGTTGGTGC GGTGGGGGTA
CTGCAGTTTG AAGTGGTTGT GGGACGTTTG AAGAGTGAGT ATAACGTCGA GGCGATTTAT
GAAGGCATTA GCGTGTCGAC TGCCCGCTGG GTTTATTGTA AAGATGAGCG TAAGCTAGAA
GAGTTTCGCC GTAAGTGCAG CCAAAACTTG GCGCTTGATG GCGGCGACAA CTTGACCTAT
ATTGCGCCAA CGATGGTTAA CCTCAATCTT TCGATGGAAA GATATCCTGA TATAGAGTTT
GCGAAAACTC GCGAACATTA A
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| Protein sequence | MSGNKVEVDK RRTFAIISHP DAGKTTITEK VLLFGNALQK AGTVKGKKSG QHAKSDWMEM
EKDRGISITT SVMQFPYGGA LVNLLDTPGH EDFSEDTYRT LTAVDSCLMV IDSAKGVEDR
TIKLMEVTRL RDTPIVTFMN KLDRDIRDPI DLMDEVENVL NIACAPITWP IGSGKEFKGV
YHILRDEVVL YQSGMGHTIQ ERRVIEGINN PDLDKAIGSY AADLRDEMEL VRGASNEFDH
AAFLKGELTP VFFGTALGNF GVDHILDGIV EWAPKPLPRE SDTRVIMPDE EKFTGFVFKI
QANMDPKHRD RVAFMRVCSG RYEQGMKMHH VRIGKDVNVS DALTFMAGDR ERAEEAYPGD
IIGLHNHGTI RIGDTFTQGE KFRFTGVPNF APEMFRRIRL RDPLKQKQLL KGLVQLSEEG
AVQVFRPLDT NDLIVGAVGV LQFEVVVGRL KSEYNVEAIY EGISVSTARW VYCKDERKLE
EFRRKCSQNL ALDGGDNLTY IAPTMVNLNL SMERYPDIEF AKTREH
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