| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2821 |
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| Symbol | deoA |
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| ID | 5080794 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 3277067 |
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| End bp | 3278398 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640500015 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_001184339 |
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| Protein GI | 146293915 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.103126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTCTAG CTCAAGAGAT TATTCGTAAA AAACGTAATG GTTTAGCGCT AAGTCCTGCA
GAAATACAGT TTTTTGTCCA AGGTATCACT ACTAACGCAG TATCCGAAGG CCAGATCGCT
GCATTCGGTA TGGCAGTGTA CTTTAATGAC ATGAATATGG ATGAAAGAAT CGCTTTGACG
ACGGCAATGC GTGATTCTGG CACTGTACTT AATTGGCAAT CATTGGGACT CAATGGCCCT
GTTATCGACA AACACAGCAC TGGCGGTGTG GGCGATGTGA TTAGCCTTAT GCTTGGCCCT
ATGGCTGCGG CTTGTGGTGG TTATGTGCCG ATGATTTCAG GACGTGGCCT AGGCCATACG
GGCGGCACGC TCGATAAGTT TGATGCGATT CCAGGTTATC AAACTGAGCC ATCAAGCGAA
CTATTTCGCA AAGTCGTTAA AGAGGTCGGT GTCGCCATTA TTGGTCAGAC AGGTGATCTC
GTTCCTGCCG ATAAACGCTT CTATTCTATC CGTGATAATA CCGCTACCGT TGAATCTATT
TCCCTCATCA CAGCGTCGAT TCTGTCTAAG AAATTAGCCT GCAATTTAGA TGCACTCGCT
ATGGATGTAA AAGTCGGTAG TGGCGCTTTT ATGCCTACCT ATGAGGCTTC TGAAGAGTTA
GCGCGCAGTA TTACTGCTGT AGCCAATGGT GCGGGAACTA AGACCACAGC ATTACTTACC
GACATGAACC AAGTGCTAGC CTCCTGTGCC GGTAACGCGG TTGAAGTGAA AGAAGCCATT
GACTTCTTAA CAGGTGCTTA CCGTAACCCA CGTCTATATG AAGTGACTAT GGGCCTTTGT
GCTGAGATGT TGCTCCTTGG CGGTCTTGCA AGCAATGAAA CTGAGGCTCG CGCTAAACTC
AATCGTGTGC TCGATAACGG CCGTGCCGCT GAAATTTTTG GCAAGATGGT CTCAGGGCTT
GGTGGGCCAG TCGATTTTGT TGAAAACTAC AGTAAGTACC TACCGCAATC ACAGATTATT
CGCCCTGTAT TTGCCGATGC AAAGGGTTAT GCCTATAGCA TGGATACCCG AGAGCTTGGT
TTAGCCGTGG TGACTCTCGG TGGTGGCCGC AGAAAGCCTG GCGATGCACT AGACTATAGT
GTTGGTTTAA CCCAAGTCTG TGCCCTTGGT GATAAAATTG ATTCATCAAC GCCTATTGCT
GTTATCCACG CACAGTCTGA AGCAGCCTTT ACAGAAGCGG AAAATGCGGT GAAAAAAGCG
ATTCACATAG GTGAAACCGC TCCAGAAAAA ACACCTGAGA TCTACGCTTA CATTCGTGCA
GCGGATCTTT AA
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| Protein sequence | MFLAQEIIRK KRNGLALSPA EIQFFVQGIT TNAVSEGQIA AFGMAVYFND MNMDERIALT
TAMRDSGTVL NWQSLGLNGP VIDKHSTGGV GDVISLMLGP MAAACGGYVP MISGRGLGHT
GGTLDKFDAI PGYQTEPSSE LFRKVVKEVG VAIIGQTGDL VPADKRFYSI RDNTATVESI
SLITASILSK KLACNLDALA MDVKVGSGAF MPTYEASEEL ARSITAVANG AGTKTTALLT
DMNQVLASCA GNAVEVKEAI DFLTGAYRNP RLYEVTMGLC AEMLLLGGLA SNETEARAKL
NRVLDNGRAA EIFGKMVSGL GGPVDFVENY SKYLPQSQII RPVFADAKGY AYSMDTRELG
LAVVTLGGGR RKPGDALDYS VGLTQVCALG DKIDSSTPIA VIHAQSEAAF TEAENAVKKA
IHIGETAPEK TPEIYAYIRA ADL
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