| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2786 |
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| Symbol | |
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| ID | 5080759 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 3233043 |
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| End bp | 3234161 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640499980 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001184304 |
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| Protein GI | 146293880 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000125206 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA CCATTATTGC CATAACCCTG CTTGCGGTTG TTGCCACAGC AGTCAGTTTT
AGTGATGTCC TTCTAGCGGC TAAACCCGAG AGCGCACCAC ATCTGATGCG TACCGTTCCC
GTGGTGACAG GTGAAGTGGT TGAACATCCG CTGACTCAAT CTATTTCGCT TATAGGCAAA
CTCGCGGCAG AACGCGCTGT AGTGATAGCC CCTCAAGTGA CCGGGAAAAT AAAACAAATC
GCCGTCACAT CCAACCAAGC CGTGAAAAAA GGCCAACTCT TAATCGAGCT TGATGATATG
AAAGCACAGG CCGCAGTAGC CGAAGCCAAC GCATACCTCA ATGACGAAAA GCGTAAACTT
AAAGAATTTG AAAAACTGAT CAGCCGCAAT GCCATTACTC AAACCGAAAT TGACGCACAA
AAAGCCAGTG TTGATATTGC ACAAGCACGC TTAACCTCCG CCCAAGCAGA TTTACATTAT
CACTCACTGA TTGCGCCATT TGCAGGTAAA ACGGGGTTAA TTAATTTCAG CGAAGGTAAA
ATGGTCAGTG TGGGAACAGA GTTGATGACA TTGGATGATT TATCCAGCAT GCGCCTCGAT
CTGCAAGTTC CGGAGCATTA TTTAGCGCAG CTCAGCATTG GTATGCCCGT CTCAGCCACA
AGTCGCGCTT GGCCAGGCGA AACCTTTATG GGCAAAGTGG TGGCAATCGA TCCTCGCGTA
AACGAAGAAA CCTTAAACCT TAAGATCCGC GTACAATTTG ATAACCCTAA AGATCGCTTA
AAGCCTGGCA TGATGATGTC ATCGACCATC ACATTTCCCG CCATATCAGC ACCCATAGTG
CCAGTCCAAG CCTTGGAATA TTCAGGCACT AAACGCTATG TCTATGTCGT TGGCGACGAC
CATATTGCTA AGCGTACTGA GGTAATTTTA GGGGCGCGTA TTGGCGATCA AGTGCTTATT
GATAACGGTT TAAAGATTGG TGATAAAGTC GTCGTGCAGG GCTTAGTGAA TATGCGCGAT
GGCTTAAAAA TCAATGAGGT TACACTCGGT TCTAAAAATA CCGATAGTTC AGAACGAGCA
GCAACACCTT CAAATACTAA AGCGACGGAG ACCAAATAA
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| Protein sequence | MKKTIIAITL LAVVATAVSF SDVLLAAKPE SAPHLMRTVP VVTGEVVEHP LTQSISLIGK
LAAERAVVIA PQVTGKIKQI AVTSNQAVKK GQLLIELDDM KAQAAVAEAN AYLNDEKRKL
KEFEKLISRN AITQTEIDAQ KASVDIAQAR LTSAQADLHY HSLIAPFAGK TGLINFSEGK
MVSVGTELMT LDDLSSMRLD LQVPEHYLAQ LSIGMPVSAT SRAWPGETFM GKVVAIDPRV
NEETLNLKIR VQFDNPKDRL KPGMMMSSTI TFPAISAPIV PVQALEYSGT KRYVYVVGDD
HIAKRTEVIL GARIGDQVLI DNGLKIGDKV VVQGLVNMRD GLKINEVTLG SKNTDSSERA
ATPSNTKATE TK
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