| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2781 |
|---|
| Symbol | |
|---|
| ID | 5080754 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 3227454 |
|---|
| End bp | 3229121 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640499975 |
|---|
| Product | putative ABC transporter ATP-binding protein |
|---|
| Protein accession | YP_001184299 |
|---|
| Protein GI | 146293875 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.957442 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCAGT TTGTTTACAG CATGCTGCGA GTGGGTAAAG TTGTTCCACC TAAGAAGCAG
ATCCTTAAAG ATATTTCTTT AAGCTTTTTC CCCGGTGCCA AAATTGGCGT ATTAGGCCTC
AACGGTTCAG GTAAATCCAC CCTACTGCGC ATTATGGCGG GTATCGACAC CGAAATTGAA
GGTGAAGCGC GCCCAATGCC GGGCCTCAAG ATTGGTTACC TGCCGCAGGA GCCTAAACTC
GATCCGACAC AAACCGTGCG TGAAGCGATT GAAGAAGCGG TTTCTGAAGC CAAAAACGCC
TTAAAACGCT TAGACGAAGT TTATGCTGCC TACGCAGAAC CCGATGCAGA CTTCGATGCC
CTTGCCAAAG AACAAGGCGA ACTCGAAGCC ATTATTCAAG CCCAAGATGC CCATAACTTA
GAACATATCC TTGAGCGTGC TGCTAACGCC CTGCGTCTGC CAGATTGGGA TGAGAAAATC
GAAGTGTTAT CGGGTGGTGA ACGTCGCCGC GTGGCGATTT GTCGCTTGCT GCTTGAAAAG
CCAGAAATGC TACTCCTCGA CGAACCCACC AACCACTTGG ATGCTGAGTC CGTGGCATGG
CTTGAGCACT TCCTGCAGGA ATATGCCGGT ACTGTGGTCG CGATCACCCA CGACAGATAC
TTCCTCGACA ATGCTGCTGG CTGGATTTTA GAACTCGACC GCGGTGAAGG TATCCCATGG
GAAGGTAACT ATTCTTCATG GCTTGAGCAA AAAGACGCCC GTCTGAAGCA AGAATCTGCC
GCAGAAAGCG CCCGTCAAAA AACCATTGCG AAAGAATTAG AATGGGTGCG CCAAGGCGCT
AAAGGCCGTC AGTCTAAGGG CAAAGCCCGT ATGGCGCGCT TTGAAGAACT GAACACTAAC
GATTACCAAA AACGCAACGA AACCAACGAG CTGTTTATTC CGCCCGGACC GCGTTTAGGT
GACAAAGTTA TTGAAGTGAA TAACCTGACT AAGTCCTATG GTGACCGCGT CCTTATTGAT
AATCTGTCGT TTTCTGTACC TAAGGGCGCT ATCGTCGGCA TTATCGGTGC CAACGGCGCG
GGTAAATCGA CCCTGTTCCG CATGTTATCC GGCGCTGAAA AGCCAGACAG CGGCAGCATT
GAGCTGGGTG ATACAGTGCA ACTGGCCTCG GTTGAGCAGT TCCGCGATTC GATGAATGAT
AAGAACACTA TCTGGCAAGA AATTTCAGGT GGCCAAGACA TCATGCGCAT CAACAACATG
GAAATTCCGA GCCGCGCCTA TGTGGGCCGC TTTAACTTCC GTGGTGCGGA TCAGCAAAAA
ATTATCGGCA CACTATCGGG CGGTGAGCGT AACCGCGTGC ATTTAGCCAA ACTGCTGCAA
GCGGGCGGTA ACGTCTTGTT ACTCGACGAA CCGACCAACG ACTTAGACGT TGAAACCTTG
CGCGCATTGG AAGAAGCGAT TCTGGAATTC CCAGGTTGCG CTATGGTGAT TTCCCATGAC
CGTTGGTTCC TCGACCGTAT CGCGACCCAC ATTCTGGATT ATCGTGACGA AGGCCAAGTG
AACTTCTACG AAGGTAACTA CACCGAATAC TCGGCATGGC TGAAAAACAC CTATGGCGCC
GATGTGGTTG AGCCACACCG CTTGAAATAT AAGCGGATGA TTAAATAA
|
|---|
| Protein sequence | MAQFVYSMLR VGKVVPPKKQ ILKDISLSFF PGAKIGVLGL NGSGKSTLLR IMAGIDTEIE
GEARPMPGLK IGYLPQEPKL DPTQTVREAI EEAVSEAKNA LKRLDEVYAA YAEPDADFDA
LAKEQGELEA IIQAQDAHNL EHILERAANA LRLPDWDEKI EVLSGGERRR VAICRLLLEK
PEMLLLDEPT NHLDAESVAW LEHFLQEYAG TVVAITHDRY FLDNAAGWIL ELDRGEGIPW
EGNYSSWLEQ KDARLKQESA AESARQKTIA KELEWVRQGA KGRQSKGKAR MARFEELNTN
DYQKRNETNE LFIPPGPRLG DKVIEVNNLT KSYGDRVLID NLSFSVPKGA IVGIIGANGA
GKSTLFRMLS GAEKPDSGSI ELGDTVQLAS VEQFRDSMND KNTIWQEISG GQDIMRINNM
EIPSRAYVGR FNFRGADQQK IIGTLSGGER NRVHLAKLLQ AGGNVLLLDE PTNDLDVETL
RALEEAILEF PGCAMVISHD RWFLDRIATH ILDYRDEGQV NFYEGNYTEY SAWLKNTYGA
DVVEPHRLKY KRMIK
|
|---|
| |