| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2780 |
|---|
| Symbol | glyA |
|---|
| ID | 5080753 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3226011 |
|---|
| End bp | 3227264 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640499974 |
|---|
| Product | serine hydroxymethyltransferase |
|---|
| Protein accession | YP_001184298 |
|---|
| Protein GI | 146293874 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0112] Glycine/serine hydroxymethyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAAAA AAGATATGAA TATCGCAGAT TATGATCCGG AACTGTTTAA CGCAATTCAG
AACGAAACTC TGCGTCAAGA AGAGCATATT GAGCTGATTG CTTCTGAAAA CTACACCAGT
CCACGCGTGA TGGAAGCGCA AGGTTCACAG TTAACCAATA AGTACGCTGA AGGCTATCCA
GGCAAGCGTT ACTACGGTGG TTGTGAGTAT GTGGACGTAG TTGAAACCTT AGCGATTGAA
CGTGCTAAAC AATTGTTTGG CGCAACCTAC GCTAACGTAC AACCTCATTC AGGTTCTCAA
GCAAACAGCG CCGTTTACAT GGCATTGTTA AAACCTGGCG ATACCGTACT GGGCATGAAC
TTAGCCCACG GTGGTCACTT GACCCACGGT TCACCGGTTA ACTTCTCTGG CAAACTGTAC
AACATCATTC CTTACGGTAT CGATGAGTCT GGCAAAATCG ACTACGACGA GATGGAACGT
ATTGCCATAG AACATAAGCC TAAGATGATG ATCGGCGGTT TCTCTGCCTA TTCAGGTATC
GTTGATTGGG CAAAAATGCG TGAAATCGCA GATAAAATCG GTGCTTATTT ATTTGTAGAC
ATGGCACACG TTGCCGGTCT TATCGCCGCG GGCGTTTATC CAAACCCAGT ACCACACGCG
CACGTTGTGA CGTCAACGAC CCATAAAACC TTAGCCGGTC CTCGTGGTGG TGTGATCCTA
TCTGCTGCCG ATGATGAAGA GCTATATAAA AAGCTCAACT CTGCTGTATT CCCTGGTGGT
CAAGGTGGTC CATTGATGCA CGTTATCGCC GGTAAAGCGG TGGCGTTCAA AGAAGCCCTC
GAGCCAGAAT TTAAAGTGTA CCAACAGCAA GTGGTTAATA ACGCTAAAGC TATGGTTGAA
GTATTCCTTG AGCGCGGTTA CAAAATCGTC TCTGGCGGAA CCAGCAACCA CTTAATGCTA
GTTGACCTGA TTGGTCGTGA CTTAACGGGT AAAGAAGCCG ATGCAGCCTT AGGTAGCGCC
AACATTACCG TGAACAAAAA TTCAGTGCCA AATGATCCTC GTTCACCCTT TGTGACATCA
GGTGTGCGTA TCGGTACGCC AGCCATTACA CGCCGCGGCT TTAAAGAAGC GGAAGCAAAA
CAATTAACTG GCTGGATCTG TGACATTCTC GATGATGCTC ACAACCCTGC AGTGATTGAG
CGAGTGAAGG GCCAAGTATT GGCACTGTGC GCACGTTTCC CTGTTTACGG TTAA
|
|---|
| Protein sequence | MLKKDMNIAD YDPELFNAIQ NETLRQEEHI ELIASENYTS PRVMEAQGSQ LTNKYAEGYP
GKRYYGGCEY VDVVETLAIE RAKQLFGATY ANVQPHSGSQ ANSAVYMALL KPGDTVLGMN
LAHGGHLTHG SPVNFSGKLY NIIPYGIDES GKIDYDEMER IAIEHKPKMM IGGFSAYSGI
VDWAKMREIA DKIGAYLFVD MAHVAGLIAA GVYPNPVPHA HVVTSTTHKT LAGPRGGVIL
SAADDEELYK KLNSAVFPGG QGGPLMHVIA GKAVAFKEAL EPEFKVYQQQ VVNNAKAMVE
VFLERGYKIV SGGTSNHLML VDLIGRDLTG KEADAALGSA NITVNKNSVP NDPRSPFVTS
GVRIGTPAIT RRGFKEAEAK QLTGWICDIL DDAHNPAVIE RVKGQVLALC ARFPVYG
|
|---|
| |