| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2766 |
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| Symbol | rumA |
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| ID | 5080833 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 3210425 |
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| End bp | 3211777 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640499960 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001184284 |
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| Protein GI | 146293860 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000280871 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACAAT TTTTTAAAGC AAAACCAAAT AGTTCCAAAC AGTTGTCAGC TAAGTTGTCG
CTAAATGTGG ATCAGCTCGA TCACTTAGGC GCTGGCATTG CTCAGTATCA AGGTAAAGTC
GTGTTCATTC CCGGCGCTTT GCCCGATGAA ACCGTGACAG TACAGCTCAC CGAACAAAAG
AAAAATTATG CCCGTGCCAA GTTGATTAAA GTCGATGCCC AGAGCCCTGA GCGCGTCGAG
CCTGAGTGTC CACACTATCA TACTTGTGGC GGCTGCGACT TACAGCATAT GTCATTATCG
GGTCAACGTG AGCATAAAGA AGCCGCGTTG CTGGATATTA TGGCAAAATT TGCAGGTACT
GAAGGCGGTG CTTTATCACC CGCATTAACC GGTGAAGGCT GGCATTATCG CCGCCGCGCC
CGTCTTGCAA CCTTATTTGA TAAAAATACC AAGCACTTAA GTTTAGGCTT TCGCGCGGCG
AGCAGCAGTA ATGTGGTGCC TATTAGCCAA TGCCAAGTAT TAGCTAAGCC GTTATCGGAC
TTGATCGTGC CATTTGCTAA GTTGCTAAAT CAATTGTCGG CTAAAGCCAG CTTAGGCCAC
CTTGAGTTGA TTGCCGCCGA TAATGGTCAC TTCGCCGTGC TGCGGATCAC TAAGGCGTTA
AACGATAAGG ATCTCGCTAA GCTGTCAGCC TTTGCCGAGC AGCATCAGAT CTATATTTGT
CTGCAGGATA ACGAAGGCCA ATTCCAAGGC GTCGGCGTCG AGTTAGTGTT ACCTGTTTAT
CAACTGTTAG ATGAAAATGC GCAGTCGGAT GCGGTGAGTT TAAGTTTCAC CCCCGGTAAC
TTTGTGCAGG TCAATAGCCA AATTAACAAG GCCATGGTCG CTCAAGCGAT GGATTGGTTA
GCGCCAGCCC CTGATGAGCG CATTTTGGAT TTGTTCTGTG GTATGGGTAA TTTCAGTTTG
CCCTTAGCGA AAATGGGCGC GGATGTGATT GGCGTCGAAG GGGTTGCCGA GATGGTAAGC
CAAGCGCGGG TGAACGCTAA AGCTAACAAT CTGGATAAAC TCACCTTTTA TCATGGCGAT
TTAAGTGCAG ATTTATCCCT TGAGCCTTGG ATGGGAAAAA TTGATAAATT ACTGCTCGAT
CCTGCTCGTG CGGGGGCATT TGAAAGCTTG CAATGGCTAA AGAAAATGAA GCCGCGTAAA
GTTCTGTATG TGTCTTGTAA TCCTGCCAGC TTAGCCCGTG ACAGTACTGT ACTATTAGAG
CGCGGTTACC GATTACAGCG ATTGGGACTT ATCGACATGT TCCCACAAAC ACACCATATT
GAAGCCATGG CACTGTTTGA ATTAACCAAG TAA
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| Protein sequence | MAQFFKAKPN SSKQLSAKLS LNVDQLDHLG AGIAQYQGKV VFIPGALPDE TVTVQLTEQK
KNYARAKLIK VDAQSPERVE PECPHYHTCG GCDLQHMSLS GQREHKEAAL LDIMAKFAGT
EGGALSPALT GEGWHYRRRA RLATLFDKNT KHLSLGFRAA SSSNVVPISQ CQVLAKPLSD
LIVPFAKLLN QLSAKASLGH LELIAADNGH FAVLRITKAL NDKDLAKLSA FAEQHQIYIC
LQDNEGQFQG VGVELVLPVY QLLDENAQSD AVSLSFTPGN FVQVNSQINK AMVAQAMDWL
APAPDERILD LFCGMGNFSL PLAKMGADVI GVEGVAEMVS QARVNAKANN LDKLTFYHGD
LSADLSLEPW MGKIDKLLLD PARAGAFESL QWLKKMKPRK VLYVSCNPAS LARDSTVLLE
RGYRLQRLGL IDMFPQTHHI EAMALFELTK
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