| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2714 |
|---|
| Symbol | |
|---|
| ID | 5079929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 3138320 |
|---|
| End bp | 3139801 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640499900 |
|---|
| Product | deoxyribodipyrimidine photo-lyase |
|---|
| Protein accession | YP_001184232 |
|---|
| Protein GI | 146293808 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0415] Deoxyribodipyrimidine photolyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATATCAC TTAAAGAACA AATGGCTACG TCAAATGTAG GCGATACACT GATGTGGTTT
CGTCAAGATT TAAGACTTGC CGATAATCAA GCATTAACAG CGGCTTGCGA TTGGGCAAGG
GCGCAAGGTA CTGCACTTAG GGCTATATAT ATTGCAACTC CCATCCAGTG GGAATGCCAT
GATGTAGCGC CTATTCAATT AGATTTTATT GAACGTCATA TTAATCTGCT TGCGAAAGGC
CTTGGATGTT TAGGTATTCA GTTTGAGTTA ATTCAATTAG AGCGTTTTGC GGATATCCCA
CAATTTATGC TTGATTATTG TCAGCAGCAC AATATTACAA GGGTGTTTGC TGGCTCAGAG
CCAGAGATAA ACGAACGAGT TCGCGATCAG GCATGCATTG ATGCGGGTGT GCCGCTGTTG
TTAACTGATG AACATTGTTT GCTCGCGCCA GGCACAGTGT TGAACTTATC GGGTGAAATG
TATCGAGTTT TTACCCCTTT TAGTCGAAAG TGGCGAGAAA TTGCCGCCCG TCATGCCATT
TTGCCGCTCG GAGTTCCCGC ACCACTTGGG CCCGTTTTAC CAGAACCTAA AGCGTTAAAT
TTAGCCGTGA ATAAAGTCTC GAGCGAACAA TGGGGCGCGG GGGAAGGGCA AGCTAAGCGT
TTGCTGTGCG ATTTTATACA GCAAAAAGTG CAAGATTATA AACAGGATCG TGATTTTCCG
GCCCTAGATG GGACGAGTTG TATTTCCCCT TATTTGGCGA TTGGCGTGCT CAGTGCACGC
CAATGTGTCG CTGCATTGTT GCAGCGTTTT CCTGAGGTGA TCGTGGATGA TACAAGCCTT
GGCCGAACTT GGCTTAACGA GCTTGTCTGG CGTGAGTTTT ATCGTCATTT ATTAGTCGCA
TTTCCAGACT TATCTAAAAA TCATAATTTT AATCGTCAAG CAGACCAAGT TCAGTGGCGT
AATAATATTG AAGAGTTTAA GGCTTGGTGC GAGGGACGAA CTGGTTATCC TATTGTTGAT
GCAGCTATGC GTCAGCTTAA TCAAACAGGT TGGATGCACA ATCGCCTGCG TATGGTGGTC
GCCAGTTTCT TAACCAAACA TTTGTTAATA GACTGGCGTT GGGGTGAGCG CTATTTCCGC
CAAAAACTCA TTGATGGTGA CTTAGCGGCT AATAATGGTG GCTGGCAATG GTCTGCTGGA
TGTGGATGTG ATGCCCAACC TTATTTCCGT ATTTTTAATC CAATGAGCCA GAGTGAAAAG
TTTGATCCAG ATGGCAGCTT TATCCGTAAA TACTTACCAG AGCTGGCATC TTGGGGAATA
AAGCAACTGC ATCAACCCAA TACCGCTAAG ACTCCTTTAT TGTTTAAACA GCCATTATTT
GCCGAACAAG CCGCTTATCC GAGTGCCATA GTGGATCACA CCGAAGCAAG GGTTAGAGCA
TTAAGTGTGC TCGGCGTATT GAAAAAGGCT TCTGCCTTAT AA
|
|---|
| Protein sequence | MISLKEQMAT SNVGDTLMWF RQDLRLADNQ ALTAACDWAR AQGTALRAIY IATPIQWECH
DVAPIQLDFI ERHINLLAKG LGCLGIQFEL IQLERFADIP QFMLDYCQQH NITRVFAGSE
PEINERVRDQ ACIDAGVPLL LTDEHCLLAP GTVLNLSGEM YRVFTPFSRK WREIAARHAI
LPLGVPAPLG PVLPEPKALN LAVNKVSSEQ WGAGEGQAKR LLCDFIQQKV QDYKQDRDFP
ALDGTSCISP YLAIGVLSAR QCVAALLQRF PEVIVDDTSL GRTWLNELVW REFYRHLLVA
FPDLSKNHNF NRQADQVQWR NNIEEFKAWC EGRTGYPIVD AAMRQLNQTG WMHNRLRMVV
ASFLTKHLLI DWRWGERYFR QKLIDGDLAA NNGGWQWSAG CGCDAQPYFR IFNPMSQSEK
FDPDGSFIRK YLPELASWGI KQLHQPNTAK TPLLFKQPLF AEQAAYPSAI VDHTEARVRA
LSVLGVLKKA SAL
|
|---|
| |