| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2671 |
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| Symbol | |
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| ID | 5079982 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 3100649 |
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| End bp | 3102385 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640499853 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001184189 |
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| Protein GI | 146293765 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00272144 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTCTA AACGGTTGAC AAGTTTAAAA CATAAAATCA CCTTCGCCTT CTATATCATA
GTGGGCATGG CGCTATTTAA CGGTATTATC GCGCTTTTAC TCTCCCACCA ATTAAGGACC
GAAATTGAAG ATTTAGTAAC TGAAGATGTG GTAAAAGTCA GCACTGCATT AGAACTGGCT
AAAGATACTG AAAAGCTACA AATCATCACG ACCAGACTCA ACCACTATGA TAATGAGTTA
CAACGTCTGC AGCTTTTAAG TGAACTCGCA ACACTGTGGG GGCTGCTTAT TGATAGCTCT
CGAACAATCG CCAAGCTGGA AACCTCCCCT CAATTACAGC AAGCGATAAA TAATATTATC
GATACTCAAC TTTATTATAT GCAGCAAATA CCGCTACTTA GCACATTGAC TGATAATGCA
TTACAAGCAA AGTTACAGGC AGGAAATATT CAAGCTAACT TAACCAGTTT GGCATCCTCT
TTTGGCGATA AGATGCAAGT CCAACTAAAA CAAATACATA ATAGTTACCC ACCACTTATA
ACCCAAAAAG ACCTCAATGC AATCTCAAAT AATATTAAAG AAAATCAATT TCTATCTGAA
TACCTTCATC AAGGAGAGCA TCTTTTCACA TTACTTACCC AAGTCAAAAA TGCTGAACAT
ATTGTCGCGT TAAATCAACT CCAACGGGAG GCTATGCGCC ATCTAATCAG TATGGAAACT
GTGTTAGCCG CATTCGATAA AAATCAAAGT ATATATGTGG ATTGGCTATC GCAAATAAAA
CAAAATGTTG TTGGAGATGA TAATTTATTT GAACTATCGC GTAATGCATT GAAAAGCAAT
AATATTGCTA ATGCTCATTT AACCTATCAA GCAAATGCTG CACAGTTGGT TGCTACATTT
ACACAAACCC TTGTCGAACA AGTAGGCAGT GAAATCCAAA AAGCCGGAGG TGATCTTAAA
AACCATAGTA CGGCATTTGT TCTGCTTATC TTTTGTGGTG GCGTCTTGTA CTGTTTTTTT
ATCTGGCTCA CAAGCTGGCA CTTTATCGAT AAGGGCATCA TTAAACCCGT CATTGCCACA
CGCGATGCGA TGGATGCCAT CGCCAATGAA AAACTTGATA CTCCAATGCC CATAACGGAT
AACCTTGAGC TTCAGCAAAT GGTGAATTCA CTCGCGACCT TAAAAACCTA TGCCGCACAA
GTCAAAGCCA TGGCTGAAAC CGATGGGTTA ACAGGCTGTT ATAACCGCCG TTATTTAGAT
AATCAGATTG AAAAAGAATT GCTATATGCT AACGACCATC AAGTACCACT GAGTATTGTG
ATGTTTGATA TCGATAACTT TAAACAATTT AATGATCGAT ATGGACATGT GATAGGTGAT
CAGTGCCTAA AGCAAATCGT CAATGCCACC AAGTCCATAT TGCAGCGACC AACAGATACC
CTTGCCCGTT ATGGTGGAGA AGAATTTATG ATCTTACTTC CATCAAGGCA CCTTGAAGAT
GCATACAAAA TTGCAGAACA TTTACGGGAA ACGATTATAG ATCTTAAGAT CCCCCATGAA
GACTCTCCCC ATGCAGGTAT TGTCACTATC AGTGCAGGTA TTACCTGTTG GCATCCTCCC
GAGCGACTCG ATACAAATAG CCTAATCAAG CGAGCCGACG AAGCCCTCTA TCACGCAAAA
CTCACGGGGC GCAATCGCAC TGAAACGCTT ATTAACATTC CATTGCGTTA TTACTAA
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| Protein sequence | MTSKRLTSLK HKITFAFYII VGMALFNGII ALLLSHQLRT EIEDLVTEDV VKVSTALELA
KDTEKLQIIT TRLNHYDNEL QRLQLLSELA TLWGLLIDSS RTIAKLETSP QLQQAINNII
DTQLYYMQQI PLLSTLTDNA LQAKLQAGNI QANLTSLASS FGDKMQVQLK QIHNSYPPLI
TQKDLNAISN NIKENQFLSE YLHQGEHLFT LLTQVKNAEH IVALNQLQRE AMRHLISMET
VLAAFDKNQS IYVDWLSQIK QNVVGDDNLF ELSRNALKSN NIANAHLTYQ ANAAQLVATF
TQTLVEQVGS EIQKAGGDLK NHSTAFVLLI FCGGVLYCFF IWLTSWHFID KGIIKPVIAT
RDAMDAIANE KLDTPMPITD NLELQQMVNS LATLKTYAAQ VKAMAETDGL TGCYNRRYLD
NQIEKELLYA NDHQVPLSIV MFDIDNFKQF NDRYGHVIGD QCLKQIVNAT KSILQRPTDT
LARYGGEEFM ILLPSRHLED AYKIAEHLRE TIIDLKIPHE DSPHAGIVTI SAGITCWHPP
ERLDTNSLIK RADEALYHAK LTGRNRTETL INIPLRYY
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