Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_2670 |
Symbol | |
ID | 5079981 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 3099204 |
End bp | 3100652 |
Gene Length | 1449 bp |
Protein Length | 482 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640499852 |
Product | extracellular solute-binding protein |
Protein accession | YP_001184188 |
Protein GI | 146293764 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00030492 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTTAAAAA AGCTTCATGT AGCACTCATT GGATTTGGAT TGACGCTAGT GACGCCGTTG AAGGCTGAAT TTTCATTAGC TCAAATTCCA CCACTGACAA ATAAAACGCC TATCACTCTC GTGGCTGAAA AAGGATTTTG GACGGACTAT CTCACCCAAG AAATGCTACC TAGATTTACA GCAAAAACGG GCGTCAGTGT CAAAGTGGTC AGCACTGAAC TTGAGTTAAT GTTTAACCTT CAAACTCAGG CATTAAAACA AGGCGAAGGA ACATATCATT TGCTTACCAT GGAGGCGGGA TGGGCAAAAG AATGGGCATC GAATGGTTAT ACGGTTCCCC TCTTAGAATT AGCAAAACTT TACGATCCCG ACGGTGAAAA AGCGATGGAG TGGTACCTTG AGCCTTATTA CCCCTCCCTG CTCAATATTT TATCTTATTC AGGCGAAATC CATGCCATTC CCTATAATAA CTATGTAATG GGGAGTCATT ACCGTGAAGA TCTTTTTAAT CATCCCACTG AGCAGGCTCG CTTTTTAGAA CGTTTCGGTT ATCCATTAAC GCCCGCCAAA ACACCTGAAG AACTTCTCGA CCAAGCCATG TTCTTTACCC GCAAAGCAGG TTCTGAACTT GGGGGAAAAA CCTTATCGCA CGATTTTTAC GGTCTTGCAT TAATGTCAGG TAATAAACCC CATATCAATG ATGAGTTTTC GAGCATACTC TGGAGCCAAG GAGGAGCTTG GATGTGGCCT CGATTTAATA ACCAACAAAA AATTACTCAT TTTGAAGTAC CAATGATTAA TCATGAGGCC ATAAGAACTG CCGAGATTTA CCGCAAATTG ATGGCATATT CAGTGCCTGC AAATGAACAA TTTGCCTTTA ATGAGGCCGC AAATGCCATT GCTACAGGAC AAGCCGCTAT CTGGCCCTTT GCTTACAATA ACCTATGGCC AATCTCTTTT CGTGTTGAGA AAAATATCCC TGGCGCACGC CTTGCGGTCG CTCAGGTTCC TGGAGGACAC CCCTATAACG GAGCCTATGC CTTTGCAGTC AGCTATGACA GCAAGAACCC ACAAGCAGCC TATTGGCTCC TTAAATATAT GGGAACCTAT GAAGCACAGT ATGCCTATGC CCTTGGGGGA GGTAACCCCT GTCGTATGGA TGTTCTCACT GCCCCTGAAT TTAATAAAGA AGCATTAAGA GAAATCGCAG GGGCATTCAA CGCCAGCCAT ATAGCAAATT TATTTTGGTC AACGAAGGTA TTAACTTTTG GCCACTTTAC GACCACAGCA ATGGGGCAAA TCTACCCTGA ACTGACTCAA GCATGTTATG CCGCGAGCCA TAAAACGACA GATAGTACTG ATATTTTCAG CAAATTAAGT ACTAAGATAA AAAATCTCCA AAATACCTAT GGGGAAGTGC CTGCGATTGA CAAGAAAGAT GAAAAATGA
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Protein sequence | MLKKLHVALI GFGLTLVTPL KAEFSLAQIP PLTNKTPITL VAEKGFWTDY LTQEMLPRFT AKTGVSVKVV STELELMFNL QTQALKQGEG TYHLLTMEAG WAKEWASNGY TVPLLELAKL YDPDGEKAME WYLEPYYPSL LNILSYSGEI HAIPYNNYVM GSHYREDLFN HPTEQARFLE RFGYPLTPAK TPEELLDQAM FFTRKAGSEL GGKTLSHDFY GLALMSGNKP HINDEFSSIL WSQGGAWMWP RFNNQQKITH FEVPMINHEA IRTAEIYRKL MAYSVPANEQ FAFNEAANAI ATGQAAIWPF AYNNLWPISF RVEKNIPGAR LAVAQVPGGH PYNGAYAFAV SYDSKNPQAA YWLLKYMGTY EAQYAYALGG GNPCRMDVLT APEFNKEALR EIAGAFNASH IANLFWSTKV LTFGHFTTTA MGQIYPELTQ ACYAASHKTT DSTDIFSKLS TKIKNLQNTY GEVPAIDKKD EK
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