Gene Sputcn32_2652 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_2652 
SymbolispG 
ID5079963 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand- 
Start bp3082521 
End bp3083636 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content46% 
IMG OID640499836 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_001184172 
Protein GI146293748 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATAATG AAACTCCCAT AAAAAGACGT CCTTCCACCC GCATTTATGT GGGTAATGTA 
CCGATTGGTG ATGGGGCGCC GATTGCCGTT CAGTCAATGA CCAATACTAA GACTACCGAT 
GTTGAGGCTA CTATTGCTCA AATTCGCGCC TTAGAAAAAG TCGGTGCCGA CATAGTGCGC 
GTTTCCGTAC CGACTATGGA TGCCGCTGAA GCCTTTAAAA TCATAAAACA ATCTGTAAAT 
GTTCCCTTAG TGGCAGATAT TCACTTTGAT TATCGTATTG CCCTCAAAGT TGCTGAATAC 
GGTGTCGATT GTTTACGCAT CAACCCAGGT AACATAGGCA ATGAAGAACG TATTCGCAGT 
GTGGTTGAGT GCGCCCGGGA TAAAAATATC CCAATTCGTA TTGGCGTCAA TGGCGGTTCA 
TTAGAAAAAG ATTTGATGGA CAAATACAAG GAGCCGACCC CCGAGGCATT GCTCGAATCG 
GCAATGCGCC ATGTGGATAT TTTAGATCGC ATGAACTTCG ACCAATTTAA GGTCAGTGTT 
AAGGCGTCGG ATGTGTTCTT GGCGGTTGAG TCCTATCGCT TATTGGCAAA ACAAATCCGC 
CAACCGCTGC ATTTAGGCAT TACCGAAGCG GGTGGCGCGC GCGCAGGCTC AGTAAAATCA 
GCCGTTGGCT TAGGCATGTT ATTGGCCGAA GGTATTGGGG ATACATTACG TATTTCCCTC 
GCTGCCGATC CCGTTGAAGA AATCAAAGTC GGTTTTGATA TCTTAAAGTC GCTACGTATT 
CGTAGTCGCG GCATTAATTT TATTGCCTGT CCATCTTGCT CGCGCCAAGA GTTTGATGTG 
ATCAGCACGG TGAATGAATT AGAGCGTCGC TTAGAAGATG TCACTACAGC GATGGATGTA 
TCTATTATTG GCTGCGTAGT GAATGGCCCA GGTGAGGCTT TAGTGTCGCA TATTGGTTTA 
ACCGGTGGAC ACAATAAGAG TGGCTACTAC GATGAGGGCG AACGTCAAAA AGAACGTTTT 
GATAATGATA ATTTAGTCGA TTCCCTCGAA GCCAAAATTC GTGCTAAGGC GAGCCAACTG 
GCAAACCGTA TCCAAGTAAA AGATACAACC GAGTAA
 
Protein sequence
MYNETPIKRR PSTRIYVGNV PIGDGAPIAV QSMTNTKTTD VEATIAQIRA LEKVGADIVR 
VSVPTMDAAE AFKIIKQSVN VPLVADIHFD YRIALKVAEY GVDCLRINPG NIGNEERIRS 
VVECARDKNI PIRIGVNGGS LEKDLMDKYK EPTPEALLES AMRHVDILDR MNFDQFKVSV 
KASDVFLAVE SYRLLAKQIR QPLHLGITEA GGARAGSVKS AVGLGMLLAE GIGDTLRISL 
AADPVEEIKV GFDILKSLRI RSRGINFIAC PSCSRQEFDV ISTVNELERR LEDVTTAMDV 
SIIGCVVNGP GEALVSHIGL TGGHNKSGYY DEGERQKERF DNDNLVDSLE AKIRAKASQL 
ANRIQVKDTT E