Gene Sputcn32_2500 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_2500 
Symbol 
ID5080844 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp2904592 
End bp2905614 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content41% 
IMG OID640499683 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_001184020 
Protein GI146293596 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0233716 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACATTGA ATCAACAGAT TAGTATGAAC CGCCCATTGA AAACTGTTGC GAAGATGCTT 
GCTATTGCAT CTGTTATTGC AACCAGTTTT AACGTGCTTG CAGCCCCCGT CGAAATTAAG
TTTTCTCATG TGGTTGCAGA AAACACCCCC AAAGGCCAAA TGGCGTTGAA ATTTAAAGAG
TTGGTTGAAC AACGCTTACC GGGTGAATAC AAAGTCAGTG TATATCCTAG CTCACAGTTA
TTTGGGGATA ACAACGAGTT AGCAGCATTA CTATTAAATG ATGTGCAATT TGTAGCGCCT
TCTCTATCAA AATTTGAACG CTACACAAAA CGTTTACAGA TATTCGATCT GCCCTTTTTA
TTCAACGATA TGGATGCAGT AAATCGCTTC CAGCAGGGAG AAGCGGGGCA AACATTATTA
AACTCAATGA CACGTAAAGG GATTGTCGGC TTAGGCTATT TACATAATGG TATGAAGCAA
TTCTCAGCCA ATACCCCGCT TAAACAACCT TCTGATGCAA AAGGGTTAAA GTTCCGCGTG
ATGGCATCGG ACGTATTAGC GGCTCAATTT GATGCGATTG GTGCGATTCC AGTAAAAAAA
CCGTTCTCGG AAGTATTTAC CCTGCTACAA ACCCGCGCTA TCGATGGTCA AGAGAATACT
TGGTCTAATA CTTATTCACA AAAATTCTAT GAAGTTCAAA GCCATATCAC AGAGAGTAAT
CATGGTGTAC TTGATTATAT GGTTGTGACC TCAGATACCT TCTGGAAAGG ATTACCAGCA
GACAAACGTA AAATCATCAA AGAAGCCTTA GATGAGTCAA TCGCATTAGG GAATAAGATT
GCTGCCGAGA AAGATAACGA AGATAAACAA TTAATCCTCG ATTCTAAACG CTCACAGTTA
GTGACATTAA CGCCAGCAGA ACGTCAACAA TGGGTAGATG TAATGAAACC TGTGTGGGCG
AAATTCGAAG ATCAAGTTGG CAAAGATATC ATCGAAGCCG CCGTTGCTGC AAATAAACAA
TAA
 
Protein sequence
MTLNQQISMN RPLKTVAKML AIASVIATSF NVLAAPVEIK FSHVVAENTP KGQMALKFKE 
LVEQRLPGEY KVSVYPSSQL FGDNNELAAL LLNDVQFVAP SLSKFERYTK RLQIFDLPFL
FNDMDAVNRF QQGEAGQTLL NSMTRKGIVG LGYLHNGMKQ FSANTPLKQP SDAKGLKFRV
MASDVLAAQF DAIGAIPVKK PFSEVFTLLQ TRAIDGQENT WSNTYSQKFY EVQSHITESN
HGVLDYMVVT SDTFWKGLPA DKRKIIKEAL DESIALGNKI AAEKDNEDKQ LILDSKRSQL
VTLTPAERQQ WVDVMKPVWA KFEDQVGKDI IEAAVAANKQ