Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_2500 |
Symbol | |
ID | 5080844 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 2904592 |
End bp | 2905614 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640499683 |
Product | TRAP dicarboxylate transporter, DctP subunit |
Protein accession | YP_001184020 |
Protein GI | 146293596 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0233716 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACATTGA ATCAACAGAT TAGTATGAAC CGCCCATTGA AAACTGTTGC GAAGATGCTT GCTATTGCAT CTGTTATTGC AACCAGTTTT AACGTGCTTG CAGCCCCCGT CGAAATTAAG TTTTCTCATG TGGTTGCAGA AAACACCCCC AAAGGCCAAA TGGCGTTGAA ATTTAAAGAG TTGGTTGAAC AACGCTTACC GGGTGAATAC AAAGTCAGTG TATATCCTAG CTCACAGTTA TTTGGGGATA ACAACGAGTT AGCAGCATTA CTATTAAATG ATGTGCAATT TGTAGCGCCT TCTCTATCAA AATTTGAACG CTACACAAAA CGTTTACAGA TATTCGATCT GCCCTTTTTA TTCAACGATA TGGATGCAGT AAATCGCTTC CAGCAGGGAG AAGCGGGGCA AACATTATTA AACTCAATGA CACGTAAAGG GATTGTCGGC TTAGGCTATT TACATAATGG TATGAAGCAA TTCTCAGCCA ATACCCCGCT TAAACAACCT TCTGATGCAA AAGGGTTAAA GTTCCGCGTG ATGGCATCGG ACGTATTAGC GGCTCAATTT GATGCGATTG GTGCGATTCC AGTAAAAAAA CCGTTCTCGG AAGTATTTAC CCTGCTACAA ACCCGCGCTA TCGATGGTCA AGAGAATACT TGGTCTAATA CTTATTCACA AAAATTCTAT GAAGTTCAAA GCCATATCAC AGAGAGTAAT CATGGTGTAC TTGATTATAT GGTTGTGACC TCAGATACCT TCTGGAAAGG ATTACCAGCA GACAAACGTA AAATCATCAA AGAAGCCTTA GATGAGTCAA TCGCATTAGG GAATAAGATT GCTGCCGAGA AAGATAACGA AGATAAACAA TTAATCCTCG ATTCTAAACG CTCACAGTTA GTGACATTAA CGCCAGCAGA ACGTCAACAA TGGGTAGATG TAATGAAACC TGTGTGGGCG AAATTCGAAG ATCAAGTTGG CAAAGATATC ATCGAAGCCG CCGTTGCTGC AAATAAACAA TAA
|
Protein sequence | MTLNQQISMN RPLKTVAKML AIASVIATSF NVLAAPVEIK FSHVVAENTP KGQMALKFKE LVEQRLPGEY KVSVYPSSQL FGDNNELAAL LLNDVQFVAP SLSKFERYTK RLQIFDLPFL FNDMDAVNRF QQGEAGQTLL NSMTRKGIVG LGYLHNGMKQ FSANTPLKQP SDAKGLKFRV MASDVLAAQF DAIGAIPVKK PFSEVFTLLQ TRAIDGQENT WSNTYSQKFY EVQSHITESN HGVLDYMVVT SDTFWKGLPA DKRKIIKEAL DESIALGNKI AAEKDNEDKQ LILDSKRSQL VTLTPAERQQ WVDVMKPVWA KFEDQVGKDI IEAAVAANKQ
|
| |