| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2495 |
|---|
| Symbol | |
|---|
| ID | 5080912 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 2893339 |
|---|
| End bp | 2894622 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640499663 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001184015 |
|---|
| Protein GI | 146293591 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAGG CTTCTTCCTC CGTGGCAAGC TTTGCCCAAC TCGGCATTAT TGCACCCTTG
CTAAATCGAT TAACCGAATT AGCGTATGTT TCGCCCACAC CAGTACAGGC GGCAACGATT
CCCGCTGTGC TTGCGGGGCG CGATGTGTTA GCCGGTGCTA ATACGGGCTC GGGTAAAACG
GCAGCCTTTG CCGTGCCGCT GTTGCAACAA CTTGTTGACG CAAAAACAGA GGATAAGACA
GGCGCTTATG TTCGTTGTTT GGTCTTAGTC CCAACCCGCG AATTAGCCCA GCAAGTCGCA
GACAGCTTTT TATCCTATGC CTCACATCTT AATGGCAAGC TAAAAATTGT CGCTGCGTTT
GGCGGTGTAT CGGTGAATGC GCAAATGCAG AGCTTACGTT CTGGCGCCGA CGTCCTAGTA
GCAACGCCGG GTCGTTTGTT AGATCTGTTG TCGAGTAATG CCATCAAACT CAATCGTGTC
AGCGCCTTAG TGCTAGATGA AGCTGACCGC ATGTTAAGCC TTGGTTTTAC TGAAGAATTA
GCCCAAGTGC TCGACGCTTT GCCCGTCAAG AAACAAACCT TATTATTCTC TGCGACATTC
CCTGAAGAAG TCCGTGAGTT AACGGCAAAA CTGCTTAATA ATCCACTTGA ATATCAATTG
CAAAGTGAGC AAGAAAGCAC GATTCATCAG CGGGTGATCA CCGTTAATCG TCCGATGAAA
ACTGCATTAT TGGCGCATCT GATTAAAGAA CATCAGTGGT CACAGGCGTT GATCTTCGTG
AGTGCCAAAA ATACCTGTAA TCACTTAGCG CAAAAGCTGT CTAAACGTGG GATCACTGCC
GAAGTGTTCC ATGGCGATAA AGCCCAAGGC GCGCGTACGC GGGTGCTCGA TGGCTTTAAA
AATGGTGAGA TCAGTGTGTT AATTGCGACC GATATTGCCG CCCGTGGTAT CGATATCGAT
AAACTGCCTG TGGTGATCAA CTTTGATTTA CCAAGGAGCC CTGCAGATTA TATGCATCGT
ATTGGCCGTA GTGGCCGCGC CGGTGAAGCA GGCTTAGCCG TGACCTTGAT TTCCCATGAG
GATTATCACC ACTTTGGCGT GATAGAGAAA AAGAACAAAC TTAAGTTAGT GCGTGAGCAA
ATTGTCGGTT TTGAAGCCGA TGATGACATG CCAGCCGAAC TGTTAGAACA AGCAAAGCCT
GTCGCTAAGC CCGAAGGCAC AGGTAAAAAA AAACGTAAAC AGTTACCGCA AGCCAATGTT
GAATTTTGGG GAAAAAAATC TTAA
|
|---|
| Protein sequence | MTQASSSVAS FAQLGIIAPL LNRLTELAYV SPTPVQAATI PAVLAGRDVL AGANTGSGKT
AAFAVPLLQQ LVDAKTEDKT GAYVRCLVLV PTRELAQQVA DSFLSYASHL NGKLKIVAAF
GGVSVNAQMQ SLRSGADVLV ATPGRLLDLL SSNAIKLNRV SALVLDEADR MLSLGFTEEL
AQVLDALPVK KQTLLFSATF PEEVRELTAK LLNNPLEYQL QSEQESTIHQ RVITVNRPMK
TALLAHLIKE HQWSQALIFV SAKNTCNHLA QKLSKRGITA EVFHGDKAQG ARTRVLDGFK
NGEISVLIAT DIAARGIDID KLPVVINFDL PRSPADYMHR IGRSGRAGEA GLAVTLISHE
DYHHFGVIEK KNKLKLVREQ IVGFEADDDM PAELLEQAKP VAKPEGTGKK KRKQLPQANV
EFWGKKS
|
|---|
| |