Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_2482 |
Symbol | secD |
ID | 5080899 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 2881108 |
End bp | 2882958 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640499650 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001184002 |
Protein GI | 146293578 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000187651 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTTAAATA AATACCCAAT GTGGAAAAAC ATTATGGTGA TGCTTATCAT CGCCATAGGT TGTTTCTATG CCGTACCGAA CCTTTTTGGT GAAGATCACG CGGTGCAAGT GGTGGCGACT CGTGGTGCAG AAGTAACTGC ATCTACCCAA GCCAGAGTGA ACGAGCTGTT AGCCGGTAAG GGCATTGCGG TAAAGCGCTC TGAGCTTGAA AAAGGCCAGT TGTTGGTTCG TGTGCAGAAC GCGGATCAAC AATTATTAGC AAAAGAAACG ATCGCAGAAG ATTTAGGTGA TAAGTTTAGT GTTGCACTTA ACTTAGCTCC AGCAACACCG CAATGGCTCG AGTCTATGGG TGGTAGCCCT ATGAAACTCG GTCTCGATCT TCGCGGCGGT GTGCACTTCT TAATGGAAGT GGACATGGGC GAAGCGATCC GCAAGATGGA AGAGGCTAAG GTTGCTGACT TTCGTGCACA ATTACGTGAA GAAACAATCC GTTATGCGGG CATTCGTGTT AATGCCTCTG GGATTGAGAT TAAATTCCGT GATGCTGAAA GTTTAGCCAG TGCAGAACGT TTCCTTAAAT CTCGCAGTAA CGATATGGTC TTCACCGATG TGAGCAAGGG TGATGATTTT GCCCTGCAAG CGGTGATGAG TGAAGCTTAT CTTAAGCAGG TTAAAGAAGA AGCACTGCAA CAAAACATTA CCACTATTCG TAACCGTGTT AATGAGTTAG GTGTTGCTGA ACCTGTAGTA CAGCGCCAAG GTGCAGAGCG TATTATCGTT GAACTACCTG GTGTACAAGA TACGGCTCGC GCTAAAGAAA TTTTAGGGGC AACCGCATCG ATTGAATTCC ATATGGTGGA TGACAAAGCC GATCCTAATG CCGCGCAATC AGGACGTATC TCTGCAGGCT CTGAAGTGTA TCAACGTCGT GAAGGCGGCC AAGTCGTATT GAAAAAAGAA GTGATGCTAA CGGGAGATCA TATCACCGGC GCCCAACCTA GCTTTGATCA ATACAGTCGC CCACAGGTGA GCATTAATCT TGACGCTAAA GGCGGTACCA TTTTCTCTAA TGTGACGAAG GACAACATAG GTAAACCTAT GGCGACCTTA TTCATTGAAT ATAAAGACAG TGGTGAACGT AACGCCGATG GCAGCGTGAA AATGCAGAAA ATCCAAGAAG TGATTTCTGT GGCAACCATT CAAGCCCGTT TAGGTCGTAA CTTTGTGATC ACAGGTTTAA GCCACGGTGA AGCACAAAAC CTTGCTTTGC TGTTACGCGC TGGAGCTTTG ATTGCACCTG TATCCATTGT TGAAGAACGT ACCATTGGTC CAAGTTTAGG CGCTGAAAAT ATTGAGAATG GTGTTCAAGC TATGGTGTGG GGTATGGCCG TCGTCTTAAT CTTCATGCTG GTGTACTACC GCGGTTTTGG GCTTATCGCT AACCTCGCGT TAACTGCAAA CTTAGTCATG GTTGTAGGCG TGATGTCGAT GATCCCAGGC GCAGTATTGA CCCTTCCCGG TATTGCGGGG ATGGTGTTGA CAGTGGGGAT GGCAGTTGAT GGTAACGTAC TCATTTATGA GCGTATTCGT GAAGAACTTC GTGCAGGACG TAGTGTACAG CAGGCCATCC ATGAAGGTTA TGGTAATGCG TTTTCAACCA TTGCCGATGC GAACATCACG ACTTTCCTTA CCGCATTAAT TTTATTTGCT GTGGGGACTG GTGCTGTTAA AGGCTTCGCG GTGACCTTGA TGATAGGTAT TGCGACTTCC ATGTTTACCT CTATCGTGGG TACTCGCTCC ATCGTTAATG CGATTTGGGG TGGTAAGCGC GTGAAGACAC TGTCTATCTA A
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Protein sequence | MLNKYPMWKN IMVMLIIAIG CFYAVPNLFG EDHAVQVVAT RGAEVTASTQ ARVNELLAGK GIAVKRSELE KGQLLVRVQN ADQQLLAKET IAEDLGDKFS VALNLAPATP QWLESMGGSP MKLGLDLRGG VHFLMEVDMG EAIRKMEEAK VADFRAQLRE ETIRYAGIRV NASGIEIKFR DAESLASAER FLKSRSNDMV FTDVSKGDDF ALQAVMSEAY LKQVKEEALQ QNITTIRNRV NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMVDDKA DPNAAQSGRI SAGSEVYQRR EGGQVVLKKE VMLTGDHITG AQPSFDQYSR PQVSINLDAK GGTIFSNVTK DNIGKPMATL FIEYKDSGER NADGSVKMQK IQEVISVATI QARLGRNFVI TGLSHGEAQN LALLLRAGAL IAPVSIVEER TIGPSLGAEN IENGVQAMVW GMAVVLIFML VYYRGFGLIA NLALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRAGRSVQ QAIHEGYGNA FSTIADANIT TFLTALILFA VGTGAVKGFA VTLMIGIATS MFTSIVGTRS IVNAIWGGKR VKTLSI
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