| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2467 |
|---|
| Symbol | |
|---|
| ID | 5078601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 2863890 |
|---|
| End bp | 2864453 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640499635 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_001183987 |
|---|
| Protein GI | 146293563 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.39138 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGCTT CTTGGCGAAA TAAATCCGCT CAGCCTGCGG TCTCTTCAGA CATGATGAGC
AAGCAACGAC GATACAACAG CCTAGTCAAG GCACTCCATG CCGATATTTT CCGTTATGCC
TATTGGCTAT GTGGTGATAA ACACGTGGCT GAAGATATTA CTCAGGAAAC CTTCCTGCGG
GCGTGGCGTG CTTTAGATTC ACTTAAAGAT GATAAAGCTG CAAAGGCGTG GTTAATCACT
ATCCTTAGAC GAGAAAATGC GCGGCGTTTT GAACGTAAAC AATTTGATTA TGCTGATATC
GAGCAAGACA CATTAGAAGA TACGCTTGGC AATAGTAGTG AAGAGTTAGT TGAACAATAT
TTAATCCGTA GGCACATTGC CAAGTTAGAT ATGGAATATC GTGAACCGTT GCTATTACAA
CTCATTGGTG GCTTTAGCGG CGATGAAATA GCTGAACTGA TGGAGCTTAA TCGTAATACC
GTGATGACGC GCTTATTTAG GGCTAGAAAT CAGTTGAAAG AGCTACTTGA AAAAAATGAT
GTAAGAGGTC AATCCAATGG ATGA
|
|---|
| Protein sequence | MFASWRNKSA QPAVSSDMMS KQRRYNSLVK ALHADIFRYA YWLCGDKHVA EDITQETFLR
AWRALDSLKD DKAAKAWLIT ILRRENARRF ERKQFDYADI EQDTLEDTLG NSSEELVEQY
LIRRHIAKLD MEYREPLLLQ LIGGFSGDEI AELMELNRNT VMTRLFRARN QLKELLEKND
VRGQSNG
|
|---|
| |