| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2466 |
|---|
| Symbol | |
|---|
| ID | 5078600 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 2862171 |
|---|
| End bp | 2863814 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640499634 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001183986 |
|---|
| Protein GI | 146293562 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.837829 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTAATCA GACAATTTTT TATCCTCTTA CTCCTTATTA TTGGAGTAAC TCACCCCGTA
TATGCCATCA CTAAGCTGGA GGCTTCGGTT GATCGAAACC CCGTGATGGA GGGCGAGTAC
TTTGTGCTAA ATATCAGTGC TGATGATGAA ATTGATACGG CTAAGCTCGA CACATCTGCC
CTATTAAAAG ACTTTATCGT CGGCCGCACT AGCGTGAGTC GCAGCACCCA GATAATGAAT
TTTGATGCGG TAAAAGAGAC GCGTTGGCAA GTGCTCCTAG CACCAAAACA AAAGGGACAA
TTAACGATCC CAGCGTTCAG TATTGATGGT GTAAATTCTG CTCCTATTCC GCTCAAAGTG
GTTGATAGCG GCAGCCAAGT CACACAAACA AACAATCTGT TTATTGATGC CAAAGTCTCA
ACCAATGAGG CCTATGTCGG CCAATTGATT ACTTACAAGG TAAAACTCTA TCTGGCGGTA
GAGTTACAAC GGGGGGTATT GAATGCTCCC GTCATTGAAG GCGCACAAAT TAAACAGATT
GGTGAAGATA AAGATGGCTC AGAAATTGTT GATGGTCGTC GTTACCGTGT AATTGAACGC
ACCTATGGCA TTATTCCCGA CTTACCCGGT CAAGTGAATA TTAAAGGCGC GACCTTCTCG
GGTGATGTAT TAGTCGAATC TCAACGCCGT GGCGGTATGT TTGGCTTTAA TGAAAGCCGT
CCTATGCAAG CTGGTGCACC GTCATTGACA GTACAAGTAG AACCCGCACC AGCAAGTTTT
CAAGGCCAAT GGTTAGTGGC AGATCTTGTC GTACTCAAAG AAAATTTCCC TGAGGAGAGT
AAAGAATTTA CCCTTGGCAA TCCGATTACT CGAACAATCA CGCTGTTAGC GTCAAATGCC
GATGAAAATA GTCTGCCAGA TGTTATGCAA GATTTACCCG ATGAATTAAA GCAATACCCA
GAAAAACCTC AACGCCAAAC CTTTGTACGC GATGCACAAA TTGTCTCCCA GTACAGTATT
ACCTCGGCAA TAGTGCCAAC CCAAGCGGGC ACATTCATCT TGCCGGAAGT TAACGTCCCT
TGGTGGAATC CACACCTTAA ACGCCAAGAA ACCGCTACGC TCCCAGCACG TACCATAGTC
GTTAAAGGTG GAGCCGTTCC TGACGCTACA GTGCAACCCA CTTGGCAAGT TGACAGCGAT
ACCGAAAATT ATTGGCCTTG GGTGAGCGCT CTTTTTGCCA TGTTGTGGCT CGTCACATTC
GTGGCATGGC GCCGCGTGCT GACACATAAA ACGACTATCG TTGCAACTCC ACATCCAAAA
GCTGCACCAA TACAAAGTTT AAAAGGCTTA GAACAAGCCT GCGCTAGCGG CAATACCAGC
GATATTTTAT CGCAATTGCA ACATCATTTT AGCCACACCA CTGGCAATAC CATGACATTA
GATAAAATTG CGGCGCTTTC TCCCCAACTT GCGGAGGCGA TTAATCGGCT GCAAAGCATC
GCCTATAGCG CCAAAGGCAA CACAACTGAA AGCCAATATC GCTTAAGTGA CGCCGCCAAT
GCATTGCTTA ACGCCGTTAA AGCCAGTGAG TTTACTCTGC CCTCGAAAGT CCATGCCCCT
TTAAGTCCAC TTAATCCAAG GTAG
|
|---|
| Protein sequence | MVIRQFFILL LLIIGVTHPV YAITKLEASV DRNPVMEGEY FVLNISADDE IDTAKLDTSA
LLKDFIVGRT SVSRSTQIMN FDAVKETRWQ VLLAPKQKGQ LTIPAFSIDG VNSAPIPLKV
VDSGSQVTQT NNLFIDAKVS TNEAYVGQLI TYKVKLYLAV ELQRGVLNAP VIEGAQIKQI
GEDKDGSEIV DGRRYRVIER TYGIIPDLPG QVNIKGATFS GDVLVESQRR GGMFGFNESR
PMQAGAPSLT VQVEPAPASF QGQWLVADLV VLKENFPEES KEFTLGNPIT RTITLLASNA
DENSLPDVMQ DLPDELKQYP EKPQRQTFVR DAQIVSQYSI TSAIVPTQAG TFILPEVNVP
WWNPHLKRQE TATLPARTIV VKGGAVPDAT VQPTWQVDSD TENYWPWVSA LFAMLWLVTF
VAWRRVLTHK TTIVATPHPK AAPIQSLKGL EQACASGNTS DILSQLQHHF SHTTGNTMTL
DKIAALSPQL AEAINRLQSI AYSAKGNTTE SQYRLSDAAN ALLNAVKASE FTLPSKVHAP
LSPLNPR
|
|---|
| |