| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2456 |
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| Symbol | |
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| ID | 5078590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 2847181 |
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| End bp | 2851497 |
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| Gene Length | 4317 bp |
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| Protein Length | 1438 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 640499624 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_001183976 |
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| Protein GI | 146293552 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCATCAT CGGATAATAT TAAGAACAAT ACTATGCCTA ACATTCTCTT GAAAGTCGTC
TTGCTCGCTA TTTTATGCTT GTACACATTA AAAGACGTAA ATGCATCTCT CTTTTCTGAT
AAGTCACCAA TAGTTCTACA ATCGCAATCT TTCGGCGTTC CGCAAGGGCT TTCACAGAGT
ACAGTTACCT CTATCGTTCA AGACAAAGAT GGTTATATTT GGATTGGCAC ACTTAACGGA
CTAAATCGTT TTGATGGTAA AGAATTTAAA CATTTTTATG CTGATGATAG TGCTTCTGGT
TTACCAAGCT CATTCATTCG AAGCCTACTT ATCACAAATG AAAATGAACT CCTAATCGGC
ACTGACAAAG GACTTGTCTT ATATAATAAA AATGATGAGT CGTTTAACAC TCTCGATATC
AAGAGTGAAT ATCTGGATGG TGAGATATGG AGTTTATCCA ACAATGACTT TAATAATGAA
ATTCTAGTTG GGATAAATAA AGGCATAGTC AGCCTTGACT TAAAGAATAA CAATATTAGA
AATGATTATA TAGGGAAAGA TTATCTTGAA GTAAAGAAAA GTTTAAATAT TGACAATAAA
ATTTTTATAA AAAGTTATGA TGGCTTTCTT TACGAAGTCA ATGAAAATAA AATAAAAATA
ATTTATGACA ACGTGTTTGA TATAGAAAAA GAAAACAAGA CTCTTTACAT ATCGACTAAC
AACGGCCTTT ACACTTACAG TCAGGAAGGT ATTTTAAAGC TATCTGAATA TAAATACACC
TTATTGAGCA AAAGTAACAG TGATATATAT GGGATTAACA AAAACAAAAT ATATTCAATT
AATAAAAATC ATAATCTAAT CGGAAGAACC TCAATTGAAA ATGAAAAAAG TAAAGAGACA
TACTTTTTCT CAACTGCTAA CTATTTTGTT ATTGGAGCTA ACAATCAAGG ATTTGAAATA
ATAAGAAAAT CAAATAACCT AGTATTTAAC ACCAATTTGA TACAAGATAA TGTATGGCAC
ATTAGCAAAA CATTCAATGG CAATATATTA GTCTCATCCG ATGATAGTAT ACTTCGTATT
TACGATACCA ATCTTAATTT GATAGAAACC TATCAATCCA ATATTATTGG TTACAAAAAT
GCTGTAATGA CAAAACATGG TGTTTATGTT GGAAATGAGA AAGGAGTATT ATTAATTAGT
AATGGAGAAA TTCATAGCAT ACTACAAAAT GAACAAGTAA CAACCATTGA TTTAATAAAT
AACAATGAAG ACATTATAGT TGGAACAAAA TCAGGAAAGG CTTTAGTTAT AAAAAATAAT
GTGGTATCAA AAACTGTTAC GACCAATAAA AATGACCCAG TGTTTGAAAC ACTTTATATT
TCAGATGCTG ACATCTATTT AGCAAGTCAG AATGGTCTAT ATCATTACAC TGACCATAAC
ATAGAAAAAG TATCAGATGA GTTGACCTAT AGCATTGCTA GATTTCAAAA CAAAATAATA
TATGGAACAT CGACATCAAT TATAGAATAC AACCCCAAAA GTAGAACTTT TAAAAAAATA
TTTTCAGATA AAAAAGAAAT CTATTCCATA TTAACAATAG GTAATTATAT TTTTGCATCA
TCTCTAGGTC AAATCATTAT GGTTGATGAT GAAAAGGTTT ATGTATTGAC CACTAACAAT
GGTAGTCAAT ACGAGTATAA TACCAGAAGT GGTGTCGTGA TTGATGAAGA TAATATATTT
TTTGGAGGCA TAAAAGGACT CAGCTTGATA TCTAAGAGCA ACATTATAGA TCATGTTAAA
ACATTAAACC CACCAGAAAC ACTTATATCT GGGTTGCGTA TTTTTAACTC TGTAATAATT
GGTGATGGTC AGTATTTCAC AGGAGCACTA AGTAGTTCAA AAAATATAAC GTTAAAATAT
TCCGACTACC CATTTACAAT AAACTTTAAC TCCCCCACAT CAGAACCATT ATCCACTTCT
TATTATTATA AAATGGATGG ATTATCTGAT GAATGGATAG CATCAAATAA CATTAATTCT
GCAACCTACA CTAACCTATC ACCTGGAAAG TATATTTTTA AAGTATATGC AATTGATTTA
TTAACTCAAA AAAAAGGTCC CGTTAAAAGT ATTGACATAA TCATAACACC CCCATGGTGG
TTATCAACTG AAGCGAAGTC ACTTTATTTT ATACTTTTAG TGGTATCTCT TTTAATTGTC
ACAAAGACTA TTTTACGCAG AAGAGAAACT CAGCGACAAA TAGCTCTAAG TGAAGAAAGA
TTAAAACTAT CCCTATGGGG TAGTGGTGAT GAAATGTGGG ACTGGGATAT AGAAACGGGC
AATATTTTTC GCTCAAATAT TTGGGGTTCC CTTGAATTCC CTCGCGATGG TCATCGTTCA
GGTAAAAACA ACGAGGAAAG TAATATTCAC CCAATGGATC AGGAGCGTGT TAGGGAAGCA
CTTAATAAAC ACTTTTATGG CGAAACAGAT CATTTTGAGG CAGCTTACAG AGTAAAAGGT
AAAGATGAAA ACTGGGTCTG GATTTTAGAT AGAGCTAAAA TTGTAGAACG AGATGATAAA
GATAATGCCC TACGTATGAC GGGAACCATT AAAAATATTA GTCAATTTAA ACAAAAAGAA
GAGCAATTAC GACTTTTTGA AAAAGCCATT GAAAATATTT CAGAAGGCAT GTTTATTCTC
GACAGTGAAT ACCGTTTTGT TGAAGTCAAT GAAGCGTGCT GTAAGATTTC ATTACGTAAC
CGAACTGATT TTATTGGCAA CTTGCTCACA TTTGATTTAT ATCCTGAAAA CTTTTCCTCT
CAAATAAGAA CCATGCTCAA ACAACAAGGT CGTTGGGCAA ATGAAGTCGA AGCAGTTAGA
GGGGATAATC GTCACTTTCA TATGGAACTC ACTATCGATG CTATTTATGA TGAATTGGGC
GAACTATCCC ATTATGTTGG GGTTTTTTCA GATATTTCTC GACGTAAACA GCAGGAAGAA
GAACTTAGAA AATTAACCAA TAATGATCTA CTGACTGGAC TCCCCAATAG ATCGAATCTA
CAGGTCACGT TAAGTAACTT AGTGAATAAG GAGATTGCCC ATTCTTTGAT GGTACTTGAT
CTTGATAACT TTAAGCGTAT CAATGACTCA TTGGGCCACC AAGTGGGGGA TCAATTGCTA
AAACTTGTTT CTATTAGAGT AAAATCTATT CTTCCTAAGA ATACGAGTAT TTATCGCTTA
GGTGGCGATG AGTTTGCAAT CGTATTGGAT AAAGGTTCTG ATATTAGTGC CAGTGCTGCA
ATTGCAGGAC GAGTAATTGA AGCATTCAAA ATGTCCTTTA ACATAAATGA AGAACAACTC
GTTTTAGGAT TAAGTATTGG AATCGTTTTA TACCCTGAAG ATGAACAGAA CGAGCAGGCC
TTGCTCAGAA AAGCTGATAT TGCTATGTAC CATGCAAAAT CGGCAGGAGG AAATTGCTAC
CAATTCTACT CTGAATCGCT CAATCAGCAT GCCATTAAAC AGTTGGAAAT AGAAAATCTT
ATTCGTGAAG GGCTGAAAGA AGATCTATTT GAAGTCTATT ACCAACCTAA AATTGATCTA
AAACGAGGTC GTGTTGCTGG CATGGAAGCT TTAGTGAGGT TAAATCATCC TGTGCAAGGT
TTAATTCCTC CTAAGGAATT TATTCCCCTC GCAGAAGAAA GTGGTTTAAT TGTTGAGATT
GGTGAAATAG TTTTACGTAA AGCCTGTTTT GCTGCACAGA AATGGCGTGA ACAGGGGTTA
TTTAACGGTA GAGTCGCTGT CAATTTATCG TCGCGTCAAT TTGCACTGCC CGATATCCAG
CAACGAATAG AGTCAATTTT AAGACTAACC AAACTCCCCG CTTGTCATCT TGAGTTAGAA
ATTACTGAAG GTACCGTCAT TAAACAACCA GAGGCAGCGA TTATCGTCAT GCAGCAATTG
GCTAAAATGG GCGTTAGTTT AGCACTAGAT GATTTCGGCA CAGGATACTC ATCCCTTTCA
TACTTAAAAC GCTTTCCTAT TCATACCTTA AAAATTGACA AAGCCTTTGT TGATGATATT
GATAAATCTG ATCGCGATCT CAAAATGGTC GATTCTATTA TCACCATCGC CCATAATATG
GGGCTTTCTG TGGTTGGTGA AGGCGTTGAA CAAACTGCAC AATTAAATAT TTTGCGAGCA
TTGAATTGTG AAGAAATCCA AGGTTATATT TTTAGCAAAG CGATAAAGGA ATCCGAGTTT
ACTCTACTTC TTCAAGCGGA CATGGTTAAG GAAACCATAA AAAACAACAT TATCTGA
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| Protein sequence | MASSDNIKNN TMPNILLKVV LLAILCLYTL KDVNASLFSD KSPIVLQSQS FGVPQGLSQS
TVTSIVQDKD GYIWIGTLNG LNRFDGKEFK HFYADDSASG LPSSFIRSLL ITNENELLIG
TDKGLVLYNK NDESFNTLDI KSEYLDGEIW SLSNNDFNNE ILVGINKGIV SLDLKNNNIR
NDYIGKDYLE VKKSLNIDNK IFIKSYDGFL YEVNENKIKI IYDNVFDIEK ENKTLYISTN
NGLYTYSQEG ILKLSEYKYT LLSKSNSDIY GINKNKIYSI NKNHNLIGRT SIENEKSKET
YFFSTANYFV IGANNQGFEI IRKSNNLVFN TNLIQDNVWH ISKTFNGNIL VSSDDSILRI
YDTNLNLIET YQSNIIGYKN AVMTKHGVYV GNEKGVLLIS NGEIHSILQN EQVTTIDLIN
NNEDIIVGTK SGKALVIKNN VVSKTVTTNK NDPVFETLYI SDADIYLASQ NGLYHYTDHN
IEKVSDELTY SIARFQNKII YGTSTSIIEY NPKSRTFKKI FSDKKEIYSI LTIGNYIFAS
SLGQIIMVDD EKVYVLTTNN GSQYEYNTRS GVVIDEDNIF FGGIKGLSLI SKSNIIDHVK
TLNPPETLIS GLRIFNSVII GDGQYFTGAL SSSKNITLKY SDYPFTINFN SPTSEPLSTS
YYYKMDGLSD EWIASNNINS ATYTNLSPGK YIFKVYAIDL LTQKKGPVKS IDIIITPPWW
LSTEAKSLYF ILLVVSLLIV TKTILRRRET QRQIALSEER LKLSLWGSGD EMWDWDIETG
NIFRSNIWGS LEFPRDGHRS GKNNEESNIH PMDQERVREA LNKHFYGETD HFEAAYRVKG
KDENWVWILD RAKIVERDDK DNALRMTGTI KNISQFKQKE EQLRLFEKAI ENISEGMFIL
DSEYRFVEVN EACCKISLRN RTDFIGNLLT FDLYPENFSS QIRTMLKQQG RWANEVEAVR
GDNRHFHMEL TIDAIYDELG ELSHYVGVFS DISRRKQQEE ELRKLTNNDL LTGLPNRSNL
QVTLSNLVNK EIAHSLMVLD LDNFKRINDS LGHQVGDQLL KLVSIRVKSI LPKNTSIYRL
GGDEFAIVLD KGSDISASAA IAGRVIEAFK MSFNINEEQL VLGLSIGIVL YPEDEQNEQA
LLRKADIAMY HAKSAGGNCY QFYSESLNQH AIKQLEIENL IREGLKEDLF EVYYQPKIDL
KRGRVAGMEA LVRLNHPVQG LIPPKEFIPL AEESGLIVEI GEIVLRKACF AAQKWREQGL
FNGRVAVNLS SRQFALPDIQ QRIESILRLT KLPACHLELE ITEGTVIKQP EAAIIVMQQL
AKMGVSLALD DFGTGYSSLS YLKRFPIHTL KIDKAFVDDI DKSDRDLKMV DSIITIAHNM
GLSVVGEGVE QTAQLNILRA LNCEEIQGYI FSKAIKESEF TLLLQADMVK ETIKNNII
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