| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2434 |
|---|
| Symbol | |
|---|
| ID | 5078568 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 2818516 |
|---|
| End bp | 2819685 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640499602 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001183954 |
|---|
| Protein GI | 146293530 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.775403 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA CATTGCTCGC TTTGATTATT CCAAGCTTAT TGTTAACGGG AACATCACAA
GCCGTTGAAC TGTATAATGA CCAAACTAAT AGCGTTAACA TGATCGGTTG GTTAGGATTT
ACCGCGTTAA ATGATGGTCA TGAAACTTCT GTTATAGATA ATTTTTCTCG CGTTGGTTTT
CGTTTCGACC GTCAAGAGAA AAATGGCTGG AGCTCCTTTG CCCATACGGA ATGGGGTATC
AATATGGTGA CCAGCGATGA CGGCCTTATA TACACGCAAG GCCAAGGTGG TGGTCAGTTA
TCGGCATCCA AAAATTCAGA TTTTCTATTC AATCGACTGG GTTATGTTGG GATGTCCCAT
GAGAAATGGG GAAAGATCAG TTTTGGTAAG CAATGGGGGG CTTACTATGA TGTTGCTTAC
ACAACTGATG TGCTCAATGC TTTCACAGGT TGGTCTGTGG GGGCTTATAC CTTCGGTGAC
GGTGGTTTAA CAGGAGCTGG ACGTGCCGAT GCTGCGCTAC AATACCGTAA TACTTTCGGT
AACCTGCATG TCGCAGTGCA GTATGCCTCT AAACAAAATA GCGATGTTGC CTTGTACGAT
GGTAATGGTG CTCCCTTGAA AGATGGTTCG GAATTGAGTT TCGAACCTAG CTATGGTGCA
AGTGTAACTT ACAACTTTAC TGATAAATTT AAAGTGCTAG TGGGATTTAA TCGTGGTGAT
TTTACCGGAA ATCTTGCAGG CCAAGAGGTT GATAACACTA ACCAAATTAT TGGTATTGGC
GCCCAATACG GTAGCTTCTA TCAATATGCT CCAGGTCGCG ATGCTGACGG TTTATACGTA
GGTTTTAACG CTCATAAGAG TGAGCAAAAC GAATTAGTGG GTGGAGATTT ATATGATTCA
ACTGGAGCTG AGTTTATTGT TGCTTATCAG TATGACAGTG GTTTCGTTCC AACCATATTA
CTGACATATC AAGATCTTGA TACCGATGAA AATACGGCGG TCCAAGGAAA ATGGGCACGC
CAATTTGCAG TGCTAGGTCT GCATTATCGT TATAGCCGCG ATACAATTAT GTACGTTGAG
GCCAAAATTG ATTTCAGCAA CATGGATGAT AAAGCTTATG AAGATCTACA AGAAAACAAC
TATGCGGTGG GAATCCGTTA TTTCTTCTAG
|
|---|
| Protein sequence | MKKTLLALII PSLLLTGTSQ AVELYNDQTN SVNMIGWLGF TALNDGHETS VIDNFSRVGF
RFDRQEKNGW SSFAHTEWGI NMVTSDDGLI YTQGQGGGQL SASKNSDFLF NRLGYVGMSH
EKWGKISFGK QWGAYYDVAY TTDVLNAFTG WSVGAYTFGD GGLTGAGRAD AALQYRNTFG
NLHVAVQYAS KQNSDVALYD GNGAPLKDGS ELSFEPSYGA SVTYNFTDKF KVLVGFNRGD
FTGNLAGQEV DNTNQIIGIG AQYGSFYQYA PGRDADGLYV GFNAHKSEQN ELVGGDLYDS
TGAEFIVAYQ YDSGFVPTIL LTYQDLDTDE NTAVQGKWAR QFAVLGLHYR YSRDTIMYVE
AKIDFSNMDD KAYEDLQENN YAVGIRYFF
|
|---|
| |