| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2280 |
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| Symbol | |
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| ID | 5080252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 2628715 |
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| End bp | 2630310 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640499442 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001183800 |
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| Protein GI | 146293376 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.234689 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACAGG CAAAGTTCGT TGAAGGCCCG ATTCTTAGGC ATATTTTAGT CATGAGTTCG
ACTGCTGCGG TGGGGATTTC AGCCCTATTT GTGGTTGATT TAATCGATAT CTTTTTCCTA
AGTTTGCTTG GTGAACATGA GCTTGCTGCT GCGGTCGGTT ATGCGGGCAG TATTTCATTT
TTTACCACAT CCATCGGGAT AGGTTTATCC ATTGCCCTCG GTGCGTTAGT TTCGCGTTCC
ATCGGTGCTA AGGATGTGTT ACTGGCGAAG CGATTATTGC TTAATAGTGC CGTTGTCACG
ACCCTTATAA GTGTATTAGT TAGCGTAGTC GTCACCCTCT TTATTCCTGA ACTCGTCGCT
CTTGTTGGGG CGAATGGTTA TACGGCCGAG CTTGCTGAAA GTTATTTGTA TATCCTTGTG
CCCTCACTGC CTTTTATATG TCTTGCAATG GCACTTGGTG GCGCGCTTCG GGCCGTGGGT
GATGCTAAGT TGTCAATGAT GTCGACCTTA GCGGGCGGTG GCGTCAATGC GGTACTGGAT
CCGATTTTTA TCTTCCTGTT TGCGATGGGA ATTGAAGGCG CTGCGCTGGC ATCTGTGTTG
GCACGTATCG CAGTGTTTAT CATTGCGGGC AGAGGCGTGG TGGTAAAACA TCAGCTCTTA
GGTCAATTTG ATTTATCCCA TTTTATGGCC GATCTTAGGC CTATATTTGC CATTGCAGGC
CCAGCGATGA TGACAAATAT TGCCACGCCT ATTGGTAATG CTTTTGTAAC CCGAGCGATA
GCCGATTTTG GCGATGCCTA TGTGGCAGGG TGGGCCGTAT TAGGCCGACT TGTTCCCGTT
GCATTTGGGA TGATTTTTGC CTTATCTGGA GCCATTGGTC CCATTGTTGG GCAAAATTTT
GGCGCAGGAC AATTCGAGCG AGTGCGTGAG AGCCTGACGA AGGCTATTCA GTTTTGTACT
TTGTATGTAC TTTCCGTGTC TCTGTTATTA TTTCTTTTGA AATCCCAAGT CGTTAGCGTG
TTTGACATGA AGGGAGATAG CGCAGAGTTA ATCGAGTTTT TCTGCAGTTA TATTGCTGTT
TTTTTTACCT TCTCAGGTGT TTTATTTGTG GCAAATGCTT CATTTAATAA TCTTGGTAAA
GCAAAATACT CAACGCTATT TAATGTAGGC AAGGCGACTT TAGGCACAAT TCCCTTTGTT
TATTTTGGGG CGCTTTGGGG CGGCGTATAT GGTGTGTTGA TTGGCCAAGT TATCGGTTCT
ATTTTATTTG GGGTTTTAGG TGTGCTGGTG GCCTACCGTT TAGTCGACAA AGTAGCTGCC
CAAGCTAAGG CTGGCGTTTT ACCTGTAAAC GCCGAGGCGA TTAGTACGCC CTTAAACTCT
GAACAAGTAT TACTTACTGA TGAGGACGAG ATTGCCAATT GTGTCGCTGA GAACTTACCG
AGTGCCACAA ACCCTTTGTC TTCTTCCCAT GTACAAATGG GACAAATGAC TGAAGAACAG
GAATGCCAGT CCATATTAAC GAGTGACGAT GTTAACAAAC CGGATAAAGT AGAAGGGACC
AAGGATAACC GAACCAAATC TAAAGTGGGT GAGTGA
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| Protein sequence | MTQAKFVEGP ILRHILVMSS TAAVGISALF VVDLIDIFFL SLLGEHELAA AVGYAGSISF
FTTSIGIGLS IALGALVSRS IGAKDVLLAK RLLLNSAVVT TLISVLVSVV VTLFIPELVA
LVGANGYTAE LAESYLYILV PSLPFICLAM ALGGALRAVG DAKLSMMSTL AGGGVNAVLD
PIFIFLFAMG IEGAALASVL ARIAVFIIAG RGVVVKHQLL GQFDLSHFMA DLRPIFAIAG
PAMMTNIATP IGNAFVTRAI ADFGDAYVAG WAVLGRLVPV AFGMIFALSG AIGPIVGQNF
GAGQFERVRE SLTKAIQFCT LYVLSVSLLL FLLKSQVVSV FDMKGDSAEL IEFFCSYIAV
FFTFSGVLFV ANASFNNLGK AKYSTLFNVG KATLGTIPFV YFGALWGGVY GVLIGQVIGS
ILFGVLGVLV AYRLVDKVAA QAKAGVLPVN AEAISTPLNS EQVLLTDEDE IANCVAENLP
SATNPLSSSH VQMGQMTEEQ ECQSILTSDD VNKPDKVEGT KDNRTKSKVG E
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