| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2250 |
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| Symbol | |
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| ID | 5080222 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 2590448 |
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| End bp | 2593090 |
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| Gene Length | 2643 bp |
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| Protein Length | 880 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640499412 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001183770 |
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| Protein GI | 146293346 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTAAAT CGCTAGTTAT TGTCGAATCG CCGGCCAAAG CTAAGACTAT TAATAAATAT
CTTGGCAAAG AATTCATCGT TAAATCGAGC GTAGGTCACA TCCGTGATCT GCCGACATCA
TCGACTTCAG AAGGCAATGA AAAGGTTAAA TCCGCTGCCG AAGTTAAGAA GATGTCGCCA
GAAGAAAAAG CTCAATATAA AAAGGTGAAG GATCAGCAAG CGCTGGTGTC TCGCATGGGC
GTTAACCCTG AAAAGGGCTG GGCGGCTAAG TACCAAATTT TGCCAGGTAA AGAAAAGGTC
GTTAAAGAGT TACAGGCACT TGCCGATTCT GCTGACCAAA TCTATCTCGC AACCGACTTA
GACCGTGAGG GAGAAGCTAT CGCCTGGCAT TTGCAAGAGG TGATTGGTGG TGATCCTTCA
CGGTATCAAC GTGTTGTTTT TAACGAAATT ACTAAGTCTG CGATTCAAGA TGCTTTTAGC
AAACCGTCGA CACTCGACAC TAACATGGTT AATGCCCAAC AAGCCCGCCG CTTTTTAGAC
CGTGTGGTGG GCTTTATGGT GTCACCACTC TTATGGAAAA AGGTGGCGCG AGGCTTGTCA
GCGGGTCGAG TCCAATCCGT CGCAGTTCGC TTAGTGGTTG AGCGAGAAAG TGAAATCAAA
GCCTTTGTGC CAGAAGAATT TTGGGATGTA CATGCCCAGT TAACTACACC CGCAGAAGAA
TCGCTGCGGA TGGAAGTGGT TAAGCATTTA GATTCAGCTT TTGAACCCAT CAATGAGCAA
CAAGCATTAG CTGCCGTGCA GGCTTTATCT TCAGCGAGCT TTAACGTCAT TTCCCGCGAA
GATAAAGCGA CACAAAGTAA ACCTTCAGCC CCTTTTATCA CCTCAACTTT GCAGCAGGCT
GCGAGTACCC GTTTAGGGTT TGGTGTTAAG AAAACCATGA TGATGGCTCA GCGACTTTAT
GAAGCAGGCC ATATCACTTA TATGCGTACT GACTCAACCA ATTTGAGCCA AGAAGCACTC
GAAAGTGTGC GTGATATGAT TGGTAAAGCA TTTGGTGCCA AATATCTACC TGCAGAACCT
ATTCGTTATG GTTCAAAGGA AGGGGCACAA GAGGCTCATG AGGCGATTCG TCCATCAAAT
GTCCACGTAG AGGCCACAGA TCTAACCGAT ATGGAGCGTG ACGCTCAGCG TTTGTATGAG
CTTATTTGGC GTCAGTTTGT TTCTTGTCAG ATGACACCAG CACAATATGA TGCAACCAAA
TTAACGGTGA AAGCGGGCGA TTACGAATTA AAAGCCACGG GACGAACGCT GCGTTTTGAT
GGTTGGACAC GGGTACAAAC CGTGCTCAAG AAGAAAAATG AAGAAGATAA TACATTGCCA
TTCGTGTCAC AGGGCGATGT ATTAGCGTTG AAAGAGTTAC AGCCTAAACA ACATTTTACT
AAGCCGCCAG CACGATACAG TGAAGCTTCT TTAGTTAAAG AATTAGAAAA ACGTGGCATT
GGCCGCCCAT CAACCTATGC AACCATCATT TCAACGATTC AAGATCGTGG TTATGTAAAA
GTCGAGAATC GTCGTTTCTA TGCCGAAAAA ATGGGTGAAA TTGTCAGTGA ACGATTAGTC
AGTAGTTTTG CTGATTTAAT GAGTTATGAC TTTACCGCCA GCATGGAGCA AACATTAGAT
GATGTGGCTC GCGGCGAATT AGATTGGAAA AAAGTGCTTG ATGGTTTCTA TGCTGACTTT
ACTAAGCAAT TAGAAAAAGC GGAGCGTGAT CCTGAAGAAG GTGGCATGCG TCTTAACCAA
ATGGTGATGA CGGATATCAA GTGCCCAACT TGTGGTCGTC CTATGGGGAT CCGTACTGGT
ACAACTGGTG TTTTCCTTGG TTGTTCTGGT TATGAGTTGC CCCCCAAAGA ACGCTGTAAG
ACGACGATGA ACTTAACGCC TGGTGTTGAG GCGATTAGCG AAAATAGTGA AGATGCTGAA
ACAGATGCAT TGCGTGCGAA GCACCGCTGT GGTATTTGCG GCACGGCAAT GGACAGTTAC
CTGATCGATG AGAAGCGTAA GTTACACGTT TGCGGTAACA ATCCGATTTG TGAAGGTTAT
GAGGTTGAAG AAGGCCAATT TAAGATCAAA GGTTATGAAG GCCCATTGAT TGAGTGTGAT
CGCTGTGGCC ATGATATGGA ATTAAAGAAT GGCCGTTTTG GTAAATATTT TGGCTGTACT
AACGAAGAAT GTAAAAATAC TCGTAAGTTA CTGAAAAATG GTGAGGCAGC GCCGCCAAAA
GAAGATCCCA TTTACTTACC AGAGCTCAAA TGCAGCAAAT CTGACGCGCA TTTTGTCTTA
CGTGATGGTG CCGCAGGTAT CTTCTTAGCG GCCAGTACTT TCCCTAAATC ACGGGAAACG
AGAGCGCCAT TAGTGGAAGA ATTGGTGAAA TACCGTGAAT TGCTGTGGCC TAAGTACCAG
TACCTTGCAG ATGCGCCAAT CTGTGATGAC GAGGGCAATA AGGCTGCTGT CAAATTTAGC
CGTAAAACAA AAGAGCAATA CGTTGCTACT GAAGTTGACG GTAAAGCGAC AGGCTGGTCT
GCGCATTACA TCAATGGTAA GTGGGTGAGT GAGTCAACGG CTAAAAAAAG TAAAAAAGCG
TAA
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| Protein sequence | MGKSLVIVES PAKAKTINKY LGKEFIVKSS VGHIRDLPTS STSEGNEKVK SAAEVKKMSP
EEKAQYKKVK DQQALVSRMG VNPEKGWAAK YQILPGKEKV VKELQALADS ADQIYLATDL
DREGEAIAWH LQEVIGGDPS RYQRVVFNEI TKSAIQDAFS KPSTLDTNMV NAQQARRFLD
RVVGFMVSPL LWKKVARGLS AGRVQSVAVR LVVERESEIK AFVPEEFWDV HAQLTTPAEE
SLRMEVVKHL DSAFEPINEQ QALAAVQALS SASFNVISRE DKATQSKPSA PFITSTLQQA
ASTRLGFGVK KTMMMAQRLY EAGHITYMRT DSTNLSQEAL ESVRDMIGKA FGAKYLPAEP
IRYGSKEGAQ EAHEAIRPSN VHVEATDLTD MERDAQRLYE LIWRQFVSCQ MTPAQYDATK
LTVKAGDYEL KATGRTLRFD GWTRVQTVLK KKNEEDNTLP FVSQGDVLAL KELQPKQHFT
KPPARYSEAS LVKELEKRGI GRPSTYATII STIQDRGYVK VENRRFYAEK MGEIVSERLV
SSFADLMSYD FTASMEQTLD DVARGELDWK KVLDGFYADF TKQLEKAERD PEEGGMRLNQ
MVMTDIKCPT CGRPMGIRTG TTGVFLGCSG YELPPKERCK TTMNLTPGVE AISENSEDAE
TDALRAKHRC GICGTAMDSY LIDEKRKLHV CGNNPICEGY EVEEGQFKIK GYEGPLIECD
RCGHDMELKN GRFGKYFGCT NEECKNTRKL LKNGEAAPPK EDPIYLPELK CSKSDAHFVL
RDGAAGIFLA ASTFPKSRET RAPLVEELVK YRELLWPKYQ YLADAPICDD EGNKAAVKFS
RKTKEQYVAT EVDGKATGWS AHYINGKWVS ESTAKKSKKA
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