| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2197 |
|---|
| Symbol | |
|---|
| ID | 5080319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 2530919 |
|---|
| End bp | 2531932 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640499359 |
|---|
| Product | BNR repeat-containing protein |
|---|
| Protein accession | YP_001183717 |
|---|
| Protein GI | 146293293 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4447] Uncharacterized protein related to plant photosystem II stability/assembly factor |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.284418 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTTC GCATCCTTCA CTGTGTTACT GCGCTCAGTC TCAGTTGTTT ATTTAGTTCT
TCTTTGTTTT CTGCGACATC AGTTACGCCG CCATCTCAAA TTCAACCTTT GGCTAGCTCA
TCACTAATAT TAGACATTGC CGATACGGGT CAACGCTTAG TCGCGGTGGG TGAGCGTGGG
CATGTACTGG TTTATGATAA CCATTGGCAA CAAGTGATTA CGCCTACATC GGTTCAGTTA
ACTAAAGTGT TTTTTATTAA TAGCACATTA GGTTGGGCTG TTGGACATGA CGCAACGATT
TTGCATACAC AGGATGGCGG TCAAACATGG CAACTCCAAA TGCAATCTAG CGAGGTTGAA
AAGCCTTTTC TCGATATTCT GTTTTTAAAT GAACGAGAAG GTATGGCGAT AGGTGCCTAT
GGATTGTTTT ATCGTACTTG GGATGGTGGC GTTAATTGGC GTGCCGAGTT CCATGAAGAA
TTACTCGCCG AAGAGGATGT CGCTTATTTG GCTGAGTTAA AAGGTAGCGA TGAAGCCGCC
TATCTGGATG AGCGAGCTTC TTTATTACCT CATTTTAACC GCATTATCGC TTTAAAAGAT
GGTCGCCTAA TTCTAGTCGG AGAACTGGGT TTAGTGGCTT CATCGGACGA TAAGGGAATA
ACCTTCACCC GAACTAGTTT TGATTATGAT GGTTCTATGT TTAATGCCAT TGAAATGCGA
GATGCAATCT ATGTGATGGG GCTGAGGGGA AATATATTTA AGACCGATTT GAGTTTGGAA
CAATGGCATG AAATTGAGAT GCCAGTACAA TCTTCAATCA ATGGGGTTAT GGCTATCTCA
GATGAAACAC TCTATTTAGT CGGCAATGCG GGGGTTGTGA TACAGCTAAA TAGTGATGAC
ACCAGTAGCA TAGTCACCCG TCGTCAAGGG GAAAATTTAG TTTCTATCGC AAAAGATAAT
CAAGGGAATA TGTGGTTATC AGGCAGCCAA GGGCTGTTTA TTCTTAAGCC ATAA
|
|---|
| Protein sequence | MSFRILHCVT ALSLSCLFSS SLFSATSVTP PSQIQPLASS SLILDIADTG QRLVAVGERG
HVLVYDNHWQ QVITPTSVQL TKVFFINSTL GWAVGHDATI LHTQDGGQTW QLQMQSSEVE
KPFLDILFLN EREGMAIGAY GLFYRTWDGG VNWRAEFHEE LLAEEDVAYL AELKGSDEAA
YLDERASLLP HFNRIIALKD GRLILVGELG LVASSDDKGI TFTRTSFDYD GSMFNAIEMR
DAIYVMGLRG NIFKTDLSLE QWHEIEMPVQ SSINGVMAIS DETLYLVGNA GVVIQLNSDD
TSSIVTRRQG ENLVSIAKDN QGNMWLSGSQ GLFILKP
|
|---|
| |