| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2167 |
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| Symbol | |
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| ID | 5080043 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 2492217 |
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| End bp | 2494085 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640499329 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001183687 |
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| Protein GI | 146293263 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGGAGT CGCGGACTTA TTACAGCGAA GGCACCATGG CAAGTGTCGA AGTGGATGGC
CCGCTGGGGC GTATTCATGC CCACTACTAC GATGGTTATG ATGAATTTAT GAATCTCACC
AGTGAGCGTA ATGGCGTCAC TGGGCTCAAC AAAAGCTACC GTTATGACGC CCTCAATCGG
TTAACGGCGT ATCAGTTTAG CAATACCAAC CCGACCTTTA ACGCCACGGT TAACTATGCC
TACGATAAGG TGGGTAACTT CCTTAACAAG ACCGACTACA GTGCCAATAG CACGAGTGCC
TACCGCTATG GCGGCAGCGC CTGTGGTTAC AAGCCAAATG CCGTATGCCA GCTAACTAAA
CTCAATGGCA CGACGGTGAG TTTTCAATAC GATAATCGCG GTAATTTACG TGTGGGTGAT
GGTCTCACCA TGACCTACAA CGCCATGGAT AAACCGCTGA GCGTCTCAGG CCGAGGTGCC
ACCACCAGTT TTGTCTATGG CAGCGATAAT ATGCGCGCCA AGCAAAGCCG TACAGTCGGT
AGCACAACCA CGACCACCTA TTATGTTGAT AAGTACTATG AAGCCGACAG TGATGGCAGC
TGGCGTGCCT ACCTTGATGA TATCGCGGTA CTGAGTTATA CCCCAACACG CAGCCATTTG
CTGCAATTTA CCCTCAAGGA TAGACTCGGC AGTGCCACCA CCCTAGCGGA CCAACATGGC
AATATCGTTA GCCAGCGCTA TTTTGACCCC TTTGGCCGCA CCACGGACCT TGGTATAAAC
CATCAGCTGG ATATCCAGAA TAAAAACACG GTACTCTCAC AGCTACAGGA TTTAGCGGTC
ACCAATAAGA ACCGCCGCGG CTTCACCGAC CACGAGCATT TGAATGAACA GCAGCTAATT
CATATGAATG GGCGGATTTA CGACTATAAC CTCGGCCGAT TTATGAGCGT GGACCCATTT
ATACAGAGTC CGACCTCAAC CCAGAGTGTC AATCCCTACA GCTACATTAT GAACAACCCG
CTCGCAGGGA CTGACCCAAC GGGATACCTC GCCGAATGCC CAGATAGAAA CGAAGGATGT
CCTAAGCCAG AAGAGGAAAA GCCTGAGAAA AAGAGGCGAA TGGACGGCAG TGGTCGGGGC
TCAGGCTGGA CGGTTATTTA CGATAGAAGC AGTAATGGTT CCAGCAAAGG TCAGGCCGCC
GTTGCCAGCT CAATAGCCAA TGCTGGTAAG ACTGCTGATA TTGGCTCGCA GAAGAATATT
GCCCAAAATT CAAGCGCAGG AAATAGCGGT ACTAGTCGAG GTGACAGTTC ACTCCAAGAG
CAAATTAAAT CGGATGCTCA TAATTCAATA GTCCGTGCTG GTGAAGAGCT TGGTGTAGAT
ATGGGGCAAG GCTCACATGC TGATTATGGA GGTGTTGATG CCAAGTGGGG CAGTGTTACG
AGAGGTGAAA ATGGAAATAT TACCAATGCA ACTATTAGTT GTGATAGAGC CTGTCAAATG
GGCGCTGCAA ATCAGGGGAG AATAACCTCT CATGATATAG CTATGGCTGC AATGAGATCT
TCTTACTTAC ATTCTCAGAG GCAAGTCGCT CAAGGCACGT ATAAGGCTGT TGAGTATGGT
TCTTACGCTT TTCTAGGGGG GGAGATTGTC GCAGCTTCAA TTGCCAGATG GTCGTTTTTA
AAGGCAACTG AAAAATTAGC GTATTTTGGA TTGATAGGAG AAGCTGCATC ACTTGCGACC
GGCGTTGATG GTTCAGCAGC GGCAGTAATG CAAGGGGCAA AAACTCTTAT TCCGAGAATG
AGGGTGGTAC CATCGGTCGG AAAGCCGAAG ATTAGGGTTG ATAAGAATGG ACAGTACATT
GTTGAGTAG
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| Protein sequence | MSESRTYYSE GTMASVEVDG PLGRIHAHYY DGYDEFMNLT SERNGVTGLN KSYRYDALNR
LTAYQFSNTN PTFNATVNYA YDKVGNFLNK TDYSANSTSA YRYGGSACGY KPNAVCQLTK
LNGTTVSFQY DNRGNLRVGD GLTMTYNAMD KPLSVSGRGA TTSFVYGSDN MRAKQSRTVG
STTTTTYYVD KYYEADSDGS WRAYLDDIAV LSYTPTRSHL LQFTLKDRLG SATTLADQHG
NIVSQRYFDP FGRTTDLGIN HQLDIQNKNT VLSQLQDLAV TNKNRRGFTD HEHLNEQQLI
HMNGRIYDYN LGRFMSVDPF IQSPTSTQSV NPYSYIMNNP LAGTDPTGYL AECPDRNEGC
PKPEEEKPEK KRRMDGSGRG SGWTVIYDRS SNGSSKGQAA VASSIANAGK TADIGSQKNI
AQNSSAGNSG TSRGDSSLQE QIKSDAHNSI VRAGEELGVD MGQGSHADYG GVDAKWGSVT
RGENGNITNA TISCDRACQM GAANQGRITS HDIAMAAMRS SYLHSQRQVA QGTYKAVEYG
SYAFLGGEIV AASIARWSFL KATEKLAYFG LIGEAASLAT GVDGSAAAVM QGAKTLIPRM
RVVPSVGKPK IRVDKNGQYI VE
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