| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2165 |
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| Symbol | |
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| ID | 5080041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 2484404 |
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| End bp | 2491750 |
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| Gene Length | 7347 bp |
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| Protein Length | 2448 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640499327 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001183685 |
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| Protein GI | 146293261 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGCCAC TGTGGACACC GCACCGTAAC TCATCTTTTG CCGCTTTTAT GTTATTGCTT
GGACTTGTAT GGGTAACACC GAGTTATGCG GCGTTAACGA GACCGAATGT TGAGATAGAC
CCCGTATTGC CAAACATTCC TTTCCCTGTG GATGCGCCGA CTCTTTCTGG CAGCCAATTT
ACGTCAATAG TGGAATTACG CTGGAGTATT AATTGCTCTG TCACTGCCGT TAATATTCAA
GAATCTGTCG ATAATCAGTC TTGGACAACT GTCTATACGG GATTAGGTCA AGCGGATAGT
GGTGCTGCTG CCTATGCTAC GTTTGCTGTT GGGGGTGATG TTTGCAGTGG TGGTTGGTCT
AGCAAACGAT TATTGCAACT CCCTAATAAG ACCCTCCCTG GTTATTACTA CCGCATCAAT
GCTTGTATCG GTTCATCCTG TAGCGCCTAT AATTTGCCTA TTTCAGTGGG CACTCCTTCT
GCGCCTTCTG CCCCCTCGGC TCCAGCCTCT ATCTCGACTC CTGCAACCAA TACTGCAGGC
GCCTTTAGTG TTTCTTGGGC TGGCGCCAGT GGCGCTACGC GTTATGAGTT ACAGCAACGC
ATTAATGGTG GCGCATGGAT TGCTCAATAT TCAGGCGCTG CTACGAGCTA TGCATTGTCG
GGACTCACTT CTGGCACTTA TCAATATCAA GTGCGTGCTT GCACTACAGC GTGCAGTGCT
TGGATGTTAT CAAGTAATAC GCAAGTGGCT TTACCTGTTA CCGGCAGTGA TTGGAGTAAC
CTATCCCCAG TAACGGTTGC TGATGCGGGT GGCAGTGACC GCGCACCTTC TGAGGCCATT
GATTTTCGAG CGTCTGCGGT TAATGGACTG GCGAGTGTCT CCGGTGGCGC AGCTGTTTTT
TCTGTGCCCA TCGACATTCC GCCGGGTCGC AATGGCATGC AGCCAGCGGT TAGTCTTGAT
TATTCATCAC GCTCAGGACA GGGTATCGCG GGAGTGGGCT GGTCAGTGAC GGCGGGCTCT
GCGCTGCACC GTTGTGATAC CACGGTTGCC CAAGAGGGGC TGAGTCGTGC GGTTATCATG
AGTGCCAGCG ACCGTTTGTG TCTCGATGGG CAAAAGTTAA TGGCTGTCAG TGGCCAATAT
GGCACATCAG GCGCGCAATA TCGTACCGAG TTAGATCAAT TTGCCAGAGT CACCCAATAC
GGCGCGTTAA CCAGTGCGAC CACCTACTTT GTCGTCGAGC GTAAAGACAA TATCGTGGCA
ACTTATGGCG GGACAACCGA CAGTCGGCAT ATTGCCCTAG GGCACACGTT ACCCATGACG
TGGGCCATCA ACAAACAACA AGACCGTGCG GGCAACACCA TGACCTATGC CTATCTCAAT
GCAGGCAGTG GTGAGTATGC GCTCAGCGCG ATTGATTACA CCGGGCACCA GTCAAGTGTC
GGTAATCGCA AAGTGGCATT TCAGTATGAA ACGCGGCCAG ACCAAGCTCG CCATTATCTT
GCCGGTGGAC TTATCCGCTC CACCCTACGA CTTAAGGCGA TTGAGTCACA GCTAGATAGT
ATCCCACTAC GCCGATATGA ATTGGCGTAT GACACGAGTT CACACACTCA ACGCTCGTTG
TTGCAATCAA TAAAAGAGTG TTATCAAGGT CAGTGTAAAG TCGCAACGGA TTTACGCAGC
TACGCCCCGT TGTTGGCGTG GGATAGCCGG GATTCCAGCA GTAGCACACA TCGCGTTATC
AGTCCTGTCG CGGGTAATGG TCGTCACGAC CAGACGCGTC GGATGGATTT AAACGGTGAT
GGCATTCAAG AGCTCGTTCA CCTGAGTGCG CAATACGATG GGACAGATAA GTTAATCAGT
TATTTGGTGA AAATTTACCA ACGACAAGCC AGTGGCGATT ACACGCTTGC CTATGACGCC
TCGGCACAGT CAAGCGATAT TGCTAACGGT ATCTTTTATT ACCCACAAGG GGACTTGAAT
GGTGATGGCA TTAGTGACTT TTTCATTGTC AACCGCACGA GTGGGCAAGT GAGCTTGTTT
CAATTTAATC AGGACTTAGT CCCACAACCC CTTATTCCCA CGAATGTCAT CCTGCCGAGC
GACTTTTGGA CTAACCCCTC TGGCGTGGGG TCCACCCTAC AGATTTTAGA TTTGAATGGC
GATGGTCATC AAGATTTTGC CTATATCGGG GCTGACCACA AGCTTTATTA CTACCAACAC
CAAGGCGGAG TGACACCGAG TTTTTCAGGC CCTCACCTAC TCACAACGCG CAGCAAGACA
ACCTACGAGG GCAAGAGCTA TCTCGAGCAG ATACGTTTTA TGGATATGGA CGGTGATGGT
GTGATGGATG TGGTCAAGAC CTTGCGCCTT GCCAACGCCT CCGAGCAAAT CAGTGTCCAG
TTTGGTAGTA TTTCATCCAA CGGCTTGTTA ACCCTTGGGG CCGCGGTATC CAGTGCCACG
CTAGGACTGC CCACCAATCA TGTTAACAAT GAGTATGTGT TTGCTGATAT CAATGGTGAT
GGTTTAGCTG ATTATATTCG TGCACTGCAA GTGGGCAGTA GCTTCAGTTG GCAGGTACGA
GAAAATCGCG GTAATCGCAC CTTTGCCCCA GAGCGCAGCT TAGGAACGGG GACGGGTATT
CATGCCCATC AAAATGGCAC GACTCGAATA CAATCACGCT GGGGCGGGCT GCGCGTTGCC
GATATTGACA GTGACGGGGT GGATGAGCTA CTGGTTGCCA CGCACAGTCT GGATAATGTG
TGTGTGGGCT TCTCTGGCAA TCCTAATAGC AGTGGCAGTC AAGAACCCTA TGATGTCACG
GTTTGTAATG ATGACTTGCA CCGCAGCGAC GTCAACTTGA GCAGCCACCC CTGGCTGACA
ATTAACATTG ACTGGTCTCG CTATGACGCT CGGCGCTTTC ATTGGACGGT ACTCGATTTT
AAAGACAGTA GCGCAGGGGC CACTATCGGC CGTGAAACCC CCAATGTGGT TTATGCACCT
ATTTCATCGT GGATGGCTCG CAATGGTGAC AGCTCAGTAG GTCTACAGAT TGAAGATATT
GATAATAATG GTTTTGCTGA TTTCAGTTAC CAAATGATGA CCAGCTACAA CCAAACCGCA
GGTCAAGGCC AGTACATCAA TGTTGCGGGC CAACCTTACT ATTACGCCAG GTTATCCATG
TATTACGCGA GTGGCTCGCC AGCCTATACC GGTGGGTATT TTGAGCAATA CAATCAGGCA
GGTGAAGGGG CTGACCGCGG CAAGTTGGTT GATACTGTGT ATGAAGTCCA AGATGGCCTC
GGTAAAACCT ATCGGTGGGA TTATGCTCCC TTGTCGAGGG TGCTCACGGG TCGCATTGAT
AATACCCCGT TTTATCAGGT GCCACCGGAG CGGTATGTTG ATAACGACCC AAGTAGAACA
CATTTTTACT TCACGTCGTC GATGTATGTG GTGAGTGACA GTTTCAGCGA TAACGGGCGC
GGAGGCACTC AGCAGACGCA ATACCACTAT AGAGAAGCTA TCTATAATCG CGCCGGCAGA
GGCTTTCAAG GGTTTAGAAC CATCATTGCC GATGATGTTG ACCGCGGCCT GCGCAGCATT
CACGAATACC ATCAATTATT TCCGTTAACC GGAAAACTGC AAGAGTCTCG CATGTGCCTC
AGTAGTGAAC CTGAATATGC TTGTGAGCTG ACACCGTTGG TCCGCGAGAA GATTGACTAT
GACGCGCTAG CGACCACCCC GTCAGGGACG CAGTGGGTTT ACCCCGTGTC CGTTGTTAAA
CAGCAGTGGG ATTTACAGGG GACACCCTTG TCCAGGGCAG AAACCCAAGT CAATCCTAGT
GATGTGGACG AATGGGGCAA TATTAGCAAG CAAACTCAAA CCGTTACTGA TTACATTAAA
GGGCAAGCCA ACACTTACAG CAGTATGACT GAAACCAGCT TTGCTGTTGA TACTAATAAC
TGGTGGCTGA ATAAGTTCAA CTGGACACGC ACGACCCACA ATACCGCGCA GCGCAACTGG
GGAGATGACC CGGTAGGCGC GACGGATAAG GCGCAGTGGC AATTGCAAAC GGTCAATACG
TGGGATAGTG CGCATCGCCT CCCCATCAAG ATGACCTATA CCGCCAGTAA CAGCAGTTGC
AATCGCATCG AAGAAACCGG ATTAAACAGT TACGGTCTGC CACTATGGAC TAAAACCACA
GGGCAAAGCA GTACGTGTAG TGCCTTGGCG GCAAGGCAAT CGAGCTTTAC CTACACCAAA
GACGGCACAA CCCAAGCTGA TGATGGCTAC CTGCCTTACA ACGTCACCAA TGCCAAAGGT
CATATCACCA CTACCGAATA CGATGTGGGG TTAGGGCTCC CCACCAAAGT GATAGCGCCT
AATAATATCG TCACCCAAAC CCAGTACGAT GGTATCGGTC GGCCGGTGCT AGTGCAGCAG
ACGGGCAGCC CCACCCGCTA TCTGCGCTAT TTACTGGCCA GTGAGGGTAA CAATCCGCCT
CAGGGCAACG ACAATATTCC CGTGGTAATG ACCCGCACCA GTGGTGCCGG TATCCCTGAT
ACGGAGCAGT ATTTTGACGG CCAAGGTCGT TTACTGCGTA CTGCAACCCA AGGCTTTGAT
GGGGGTTATC AGTATCAGGA TAAACATTAT GATGCACTTG GACGCTTAAC CCGAGAATCG
ACGCCCTATG GTAACGGCAC GGCGGCAGAT TATACCGAGT TCAGCGATTT TGATGCGCTT
GATAGACCCG GCAGACGCAC CATTCCTAAT GGGCGCTCCG GCGGGCTAGA GTCCCTATAC
ACCTATAACG GGTTAACCAC GGATATCAAT GTCGAAGGAC GCTTGATGTC ACGTACCTAT
GGCAGTCAAG GCTGGCTGTA TGAAACGGTG GATGCCGGCA CTTCAAGTCA GGAGCCAGGC
ACTAACCGTT TTGCCTACGA TAGTGCCGGC AGACCGTTAG TTATCCGCGA TGCCAACAAT
CATGATATCA CGGCAACTTA CAACGGCTTT GGTCATAAAA CTCAAGTCAT TGACCCTAAT
CAAGGCACTA CCAATTTTGG TTACAACAGC CTAGGCGAGC TGGATAAGCA AACCGACGCC
AATGGCGTGC TGCAAACCAC TGTGCTCGAT GTGTTAGGGC GTGTCACCAG TAAAACCACC
ACGGGCGGCA GTGCACCAGG GACAGCGACC TTTGTGTGGG ACACCCTCAA ACAAGGCTTG
CTGACGTCCG AGACCGAAAA TGGCGTCGCT CGCACTTATG CCTATACGCC CGCGCTGCAA
CTGGCACAAA CCACGGTCAC CGTCGATAGC ACCAGTCGCA CAGTTAAGCA TCAGTACGAT
GGCTTCTATG GCAGACCAAA AGCCTTGGAG TATCCGAACG GCTTAACCCT GAAATATAGC
TATAACGATT ATGGTTACCT CGAGCAGACC AGCAATACTG CTTCTGGCTA CCTTTATCGT
CAAGTCACTG CCATGGATGA GGCAGGCCAT ATCACGGGGG CTGACCTTGC TAACCGGGTG
ATGTCGGAAT CTCGCAGCTA TTACAGCGAA GGCACCATGG CAAGTGTCGA AGTGGATGGC
CCGCTGGGGC GTATTCATGC CCACTACTAC GATGGCTACG ATGAGTTTAT GAACCTCACC
AGTGAGCGTG ATGGGGTGAC AGGCCTAACT AAGAATTACC GTTATGACAC GCTTAATCGC
CTAACCGAGT ATCAGTTTAG CAATACCAAT CCGACCTTTA GCGCCACGGT TAACTATGCC
TACAACAAGG TCGGTAACTT CCTTAACAAG ACCGACTACA GTGCCAATAG CACCACTGCC
TACCGTTATG GTGGCAGCGC CAGCTGTGCC GCGGGCAATA ATGCCGGCCC CAATGCCGTA
TGTCAGCTAA CTAAACTCAA TGGCACCACG GTGAGTTTTC AATACGATAA TCGTGGTAAT
TTACGTGTAG GTGATGGTCT CACCATGACC TACAACGCCA TGGATAAACC GCTGAGCGTC
TCAGGCCGAG GTGCCACCAC CAGTTTTGTC TATGGCAGCG ATAATATGCG CGCCAAGCAA
AGCCGTACAG TCGGTAGCAC AACCACGACC ACCTATTATG TTGATAAGTA CTATGAAGCC
GACAGTGATG GCAGCTGGCG TGCCTACCTT GATGATATCG CGGTACTGAG TTATACCCCA
ACACGCAGCC ATTTGCTGCA ATTTACCCTC AAGGATAGAC TCGGCAGTGC CACCACCCTA
GCGGACCAAC ATGGCAATAT CGTTAGCCAG CGCTATTTTG ACCCCTTTGG CCGCACCACG
GACCTTGGTA TAAACCATCA GCTGGATATC CAGAATAAAA ACACGGTACT CTCACAGCTA
CAGGATTTAG CGGTCACCAA TAAGAACCGC CGCGGCTTCA CCGACCACGA GCATTTGAAT
GAACAGCAGC TAATTCATAT GAATGGGCGG ATTTACGACT ATAACCTCGG CCGATTTATG
AGCGTGGACC CATTTATACA GAGTCCGACC TCAACCCAGA GTGTGAATCC CTACAGCTAC
ATTATGAACA ACCCGCTCGC AGGGACTGAC CCAACGGGAT ACTATGCCGA GTGCCCAGAT
AAAATAGCGG GATGTAAACC GAATAAGGAA ACCCCCGAGA GAAAGGAGCG CAGTGGCCGT
GGTTTTGTGG GCGGAGTCAT TTACCAGAGC AGTGATAATG GTTCAAGTCG GCAATCGAGC
TCGGCAACTG GTACGCAGAA AACCGAGGCA ATAGGTTCTC CGAAGCAAAA TGCTGCTAAC
GGAGAAACGG CACCTAAGCC TACGGAGAAT GATGGCTGGA GCTATATAGG CCAAAATGCT
GAAGGAATGG AGAACTACCA GACCGTCTAC ACACCTCCTT CAGCAGGCAT GATTACAGCC
TCTCAAGCCA GTTTCTTATT CGTGATGGCG GCCGTTGATG GGCCTGCACC AATAGGTGAT
GGGTTGGCTA TTGCTGTTGG AGCAGGATTT GTCGCTTATA ACATGTCCCA TGGCAATAAA
TCAGACTCAT TAAAAGCGTT AGCAATAATG AGGGGGGATG CTGTTTCAAG CCCAGGCTCA
CCGATGCCTG ATCCTGATGA TGAACAAAAT AATGATGGTC GGCCTAATGG AGTTCCAAAG
AATTGGGTGA AAGAAAAGGC TAAAAAAGAT GGTCATATTA AATGGGTTAA TCCCAAAAAC
CCTCATGATT ACGTGAGGGT TAAACCTAAC GGAGAGATAA CTCAAGTTCG AAATGGAATG
GCATACGATC AGTATGGGAA TCGTGTCGCA TTACGTTCAC CAGAAGCTCA TGGTATAACC
AGAGATAATT TTATTTTTAG GAAATGA
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| Protein sequence | MLPLWTPHRN SSFAAFMLLL GLVWVTPSYA ALTRPNVEID PVLPNIPFPV DAPTLSGSQF
TSIVELRWSI NCSVTAVNIQ ESVDNQSWTT VYTGLGQADS GAAAYATFAV GGDVCSGGWS
SKRLLQLPNK TLPGYYYRIN ACIGSSCSAY NLPISVGTPS APSAPSAPAS ISTPATNTAG
AFSVSWAGAS GATRYELQQR INGGAWIAQY SGAATSYALS GLTSGTYQYQ VRACTTACSA
WMLSSNTQVA LPVTGSDWSN LSPVTVADAG GSDRAPSEAI DFRASAVNGL ASVSGGAAVF
SVPIDIPPGR NGMQPAVSLD YSSRSGQGIA GVGWSVTAGS ALHRCDTTVA QEGLSRAVIM
SASDRLCLDG QKLMAVSGQY GTSGAQYRTE LDQFARVTQY GALTSATTYF VVERKDNIVA
TYGGTTDSRH IALGHTLPMT WAINKQQDRA GNTMTYAYLN AGSGEYALSA IDYTGHQSSV
GNRKVAFQYE TRPDQARHYL AGGLIRSTLR LKAIESQLDS IPLRRYELAY DTSSHTQRSL
LQSIKECYQG QCKVATDLRS YAPLLAWDSR DSSSSTHRVI SPVAGNGRHD QTRRMDLNGD
GIQELVHLSA QYDGTDKLIS YLVKIYQRQA SGDYTLAYDA SAQSSDIANG IFYYPQGDLN
GDGISDFFIV NRTSGQVSLF QFNQDLVPQP LIPTNVILPS DFWTNPSGVG STLQILDLNG
DGHQDFAYIG ADHKLYYYQH QGGVTPSFSG PHLLTTRSKT TYEGKSYLEQ IRFMDMDGDG
VMDVVKTLRL ANASEQISVQ FGSISSNGLL TLGAAVSSAT LGLPTNHVNN EYVFADINGD
GLADYIRALQ VGSSFSWQVR ENRGNRTFAP ERSLGTGTGI HAHQNGTTRI QSRWGGLRVA
DIDSDGVDEL LVATHSLDNV CVGFSGNPNS SGSQEPYDVT VCNDDLHRSD VNLSSHPWLT
INIDWSRYDA RRFHWTVLDF KDSSAGATIG RETPNVVYAP ISSWMARNGD SSVGLQIEDI
DNNGFADFSY QMMTSYNQTA GQGQYINVAG QPYYYARLSM YYASGSPAYT GGYFEQYNQA
GEGADRGKLV DTVYEVQDGL GKTYRWDYAP LSRVLTGRID NTPFYQVPPE RYVDNDPSRT
HFYFTSSMYV VSDSFSDNGR GGTQQTQYHY REAIYNRAGR GFQGFRTIIA DDVDRGLRSI
HEYHQLFPLT GKLQESRMCL SSEPEYACEL TPLVREKIDY DALATTPSGT QWVYPVSVVK
QQWDLQGTPL SRAETQVNPS DVDEWGNISK QTQTVTDYIK GQANTYSSMT ETSFAVDTNN
WWLNKFNWTR TTHNTAQRNW GDDPVGATDK AQWQLQTVNT WDSAHRLPIK MTYTASNSSC
NRIEETGLNS YGLPLWTKTT GQSSTCSALA ARQSSFTYTK DGTTQADDGY LPYNVTNAKG
HITTTEYDVG LGLPTKVIAP NNIVTQTQYD GIGRPVLVQQ TGSPTRYLRY LLASEGNNPP
QGNDNIPVVM TRTSGAGIPD TEQYFDGQGR LLRTATQGFD GGYQYQDKHY DALGRLTRES
TPYGNGTAAD YTEFSDFDAL DRPGRRTIPN GRSGGLESLY TYNGLTTDIN VEGRLMSRTY
GSQGWLYETV DAGTSSQEPG TNRFAYDSAG RPLVIRDANN HDITATYNGF GHKTQVIDPN
QGTTNFGYNS LGELDKQTDA NGVLQTTVLD VLGRVTSKTT TGGSAPGTAT FVWDTLKQGL
LTSETENGVA RTYAYTPALQ LAQTTVTVDS TSRTVKHQYD GFYGRPKALE YPNGLTLKYS
YNDYGYLEQT SNTASGYLYR QVTAMDEAGH ITGADLANRV MSESRSYYSE GTMASVEVDG
PLGRIHAHYY DGYDEFMNLT SERDGVTGLT KNYRYDTLNR LTEYQFSNTN PTFSATVNYA
YNKVGNFLNK TDYSANSTTA YRYGGSASCA AGNNAGPNAV CQLTKLNGTT VSFQYDNRGN
LRVGDGLTMT YNAMDKPLSV SGRGATTSFV YGSDNMRAKQ SRTVGSTTTT TYYVDKYYEA
DSDGSWRAYL DDIAVLSYTP TRSHLLQFTL KDRLGSATTL ADQHGNIVSQ RYFDPFGRTT
DLGINHQLDI QNKNTVLSQL QDLAVTNKNR RGFTDHEHLN EQQLIHMNGR IYDYNLGRFM
SVDPFIQSPT STQSVNPYSY IMNNPLAGTD PTGYYAECPD KIAGCKPNKE TPERKERSGR
GFVGGVIYQS SDNGSSRQSS SATGTQKTEA IGSPKQNAAN GETAPKPTEN DGWSYIGQNA
EGMENYQTVY TPPSAGMITA SQASFLFVMA AVDGPAPIGD GLAIAVGAGF VAYNMSHGNK
SDSLKALAIM RGDAVSSPGS PMPDPDDEQN NDGRPNGVPK NWVKEKAKKD GHIKWVNPKN
PHDYVRVKPN GEITQVRNGM AYDQYGNRVA LRSPEAHGIT RDNFIFRK
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