| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2158 |
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| Symbol | |
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| ID | 5080034 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | + |
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| Start bp | 2473522 |
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| End bp | 2477010 |
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| Gene Length | 3489 bp |
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| Protein Length | 1162 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640499320 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001183678 |
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| Protein GI | 146293254 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0247263 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCACT TTTCAGCCCT AACGCCACCA GTCGTCAAAA ATGGTACTCA AATGCAAACC
CTATCCGCAC TCGGTGGTGT TTGCCAAGCG GTCACACTCG CCAGCTTAGT GCGCCAACAT
CCAGGGACAA CACTGCTTGT CACCAGCGAC ACGCCTAGCG CCTTAAGCTT AGAGTTAGAG
CTCACCTATT TACTCGGTAA ATGTGATATC AAGGTTCGGC TATTCCCAGA TCGTGAAACC
TTGCCCTATG ACAGTTTCTC GCCCCATCAG GATCTGATCT CTCAACGCCT AGAAACGCTG
TCACAAATAT CCCAAACCGA ACACAGTGTG GTTATCGTCC CCGTCACCAC TTTGATGATG
CGCCTGCCAC CTAAAGCCTA TTTGAGCGCC AACGTCTTTG TGCTTAAAAA GGGCGATAGA
TATCAATTAC ACAATGTACG CCAACATTTA ACTGATACAG GTTACCACTT GGTGGAGCAA
GTGTATGAAC ATGGCGAGTT TGCCATTCGT GGTTCGATTT TGGATATTTT CCCGACGGGC
GTTAATATGC CGCTGCGCAT CGAGCTATTC GATGATGAAG TTGAGACCAT TCGCCATTTC
GACCCTGAAA CCCAGCGTTC GTTACATCCT GTTGAGTCCA TTCGCCTATT ACCGGCAAAG
GAGTTTCCGA CTGACAGTGC CGCCATTGAA GGATTTAGGC AACGATACCG CCGCCGTTTT
GAAGTGATAG TCAAAGAGCC TGAATCGGTT TACCAATTGG TAAGTCGTAA TCTCATGCCC
GCAGGGATTG AAAATTACCT GCCACTGTTT TTTGATGAAG TCGCAACCCT ATTTGATTAC
TTACCCAAGG AGACTCAACT TGTCACCCTT GGGGATATTG AAAAATCCGC CCGAGCCCAT
TTGCAGGAAG TCGAAACCCG CTACCAAGAC AGACGTGTCG ATCCACTGCG GCCACTGCTC
GCGCCTAAAG AACTGTATTT ACTGATTGAA GAGCTATTTG CAGCATTTAA ACCACTGCCG
CGCTATCAGT TTATTTCGCC CACTACCGAG TCGGTAGAGA CAGGTAAAAC CACAGTTATC
GATGCTAATC AACTTCCCGA TATCAGTGCG AATCACAAAT TAAAGCAGCC ATTACTCGCA
TTACAAGATT ACGCCCAAAA TGCACCGCGG ATGCTATTTA GCGCCGAGTC TGAAGGACGG
CGCGAAGCCC TGCTTGAACT CTTAAGTAAA ATCCAACTTA AACCCGCATT ATTCAGCCAT
TTTGATGAAT TTATTCAAAG TGATGCCAAA CTGGGGCTTA TCGTTTCACC ACTATCACGC
GGCTGTTTAC TTAAGCTCAG TCCAAAAGAT GCCGTGAGCA TTATTTGTGA GACAGAACTT
TTTGGTCACC GTATCTCCCA GCAGCGGCGC CGGGAAAAAC AGCGCCAGAT CAGCAATGAT
GCCCTGATTA AAAACTTAGC CGAACTGAAA GTCGGCCAAC CCATAGTGCA CCTCGAACAC
GGTGTAGCGC TATACCAAGG CTTAGTGACC CTAGACACGG GCGGTTTAGT TGCCGAATAC
CTGCAATTAG AATACGCAGG TGGCGATAAA CTCTATGTAC CCGTATCGAA CTTACACCTG
ATCAGCCGTT ACAGTGTTGG TGCAGATGAA GACGCCCATC TCAATAAACT TGGCAACGAG
ACGTGGGCCA AAGCCAAGAA CAAAGCCATA GAGAAAATCC GCGATGTGGC AGCAGAACTG
CTTGATGTTT ACGCCCGTCG CCAAGCGCGT CCCGGCGAAA GTTGCGAGAT TGACGAAGAG
GAATATGCCC AATTTGCCCA AGGGTTCCCC TTTGAAGAAA CCGTCGATCA AGAAAGTGCT
ATTCATGCCG TATTAGCAGA CATGCGTTCC CCAATTGCCA TGGACAGACT TGTATGTGGT
GACGTGGGCT TTGGTAAAAC GGAAGTCGCA ATGCGCGCGG CCTTTGTGGC CGTCAACGCA
GGTAAGCAAG TCGTAGTGCT AGTTCCTACC ACCTTGCTTG CCCAGCAGCA TTATGAAAAC
TTTAAGGATA GATTCGCCGA TTGGCCCGTT GTCACAGAGG TGATGTCGCG ATTTAGAACG
GCAAAAGAAC AAACCCAAGT GCTCAAGCAG CTGGAAGAAG GTAAAGTCGA TATCGTTATC
GGCACCCATA AGTTACTGCA ATCTGAAGCT AAATTTGAAA ATCTCGGCTT ACTGATCATT
GATGAAGAAC ACAGATTCGG TGTACGCCAA AAAGAAAAAA TTAAGGCGCT GCGGGCCAAT
GTGGATATTT TAACCCTCAC AGCAACCCCC ATTCCGCGAA CCTTAAATAT GGCCATGTCG
GGCATGCGTG ATTTATCCAT TATCGCCACC CCACCCGCCA AACGCTTAGC CGTAAAAACC
TTTGTTCGCG AATCCGATCC CGCAACCGTG CGCGAAGCCA TTCTGCGGGA AATTCTGCGT
GGTGGCCAAG TCTATTATCT GCACAATAAT GTCGAAAGCA TTGAAAAGTG TGCCCAAGGG
ATTATCGACT TAGTGCCTGA AGCTCGCGTT GTCGTCGCCC ATGGTCAAAT GCGTGAACGG
GATCTTGAGC GAGTCATGTC AGACTTTTAT CATCAAAGAT TCAACGTGTT AGTCTGTACT
ACTATTATCG AAACTGGGAT TGACGTCCCC AGCGCAAACA CCATTATTAT TGAGCGCGCC
GATACCTTTG GTCTGGCACA ATTACACCAA CTGCGTGGTC GTGTAGGCCG CTCACATCAT
CAAGCCTATG CTTATTTGAT GACACCACAC CCCAAACGCA TGACAAGTGA TGCCCGTAAA
CGCCTTGAAG CCATTGATGC ACTAGAAGAT CTTGGTGCTG GATTTATGCT CGCAACCCAA
GATTTAGAGA TCCGCGGTGC GGGAGAACTC CTTGGGGACG AGCAAAGCGG CCATATTTCC
AAAATAGGTT TTAGCTTGTA CATGGAAATG CTTGAAGCGG CAGTCAAAGC CTTAAAACAA
GGCAAAGAGC CATCGCTTGC GCAAATGCTC AACCAGCAAT GTGAAATCGA ACTAAGGATC
CCAGCGCTAT TGCCTGAGGC CTATGTGAGC GATGTAAATA TTCGCCTATC CTTATATAAA
CGCATTGCAG GCTGCGAAAC CCAAGAGGCA CTCGATGAAT TAAAAGTCGA ATTAATTGAT
CGCTTTGGCT TACTGCCAGA GGCGACTAAA AACCTCATGG AAATGACGCT CTATAAACAT
CAAGCAACTC GCCTAGGGGC GACTAAAATT GAAGTACACG CCAAAGGCGG CAGTATCGAA
TTTAGCCATG ATCATGTGAT AGATCCGGGT TTTATTATTG GATTACTCCA AAGCCAGCCA
CAAATCTATC GAATGGAAGG GCCGAATAAG TTAAAGTTCA GTCTTACTGC TGAAACAGCC
AAAGATAGAC TCGATGTAGT CAAACTCTTG CTTGAACAAT TATCGCAACA TCGTCTTGGA
GATAAATAG
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| Protein sequence | MTHFSALTPP VVKNGTQMQT LSALGGVCQA VTLASLVRQH PGTTLLVTSD TPSALSLELE
LTYLLGKCDI KVRLFPDRET LPYDSFSPHQ DLISQRLETL SQISQTEHSV VIVPVTTLMM
RLPPKAYLSA NVFVLKKGDR YQLHNVRQHL TDTGYHLVEQ VYEHGEFAIR GSILDIFPTG
VNMPLRIELF DDEVETIRHF DPETQRSLHP VESIRLLPAK EFPTDSAAIE GFRQRYRRRF
EVIVKEPESV YQLVSRNLMP AGIENYLPLF FDEVATLFDY LPKETQLVTL GDIEKSARAH
LQEVETRYQD RRVDPLRPLL APKELYLLIE ELFAAFKPLP RYQFISPTTE SVETGKTTVI
DANQLPDISA NHKLKQPLLA LQDYAQNAPR MLFSAESEGR REALLELLSK IQLKPALFSH
FDEFIQSDAK LGLIVSPLSR GCLLKLSPKD AVSIICETEL FGHRISQQRR REKQRQISND
ALIKNLAELK VGQPIVHLEH GVALYQGLVT LDTGGLVAEY LQLEYAGGDK LYVPVSNLHL
ISRYSVGADE DAHLNKLGNE TWAKAKNKAI EKIRDVAAEL LDVYARRQAR PGESCEIDEE
EYAQFAQGFP FEETVDQESA IHAVLADMRS PIAMDRLVCG DVGFGKTEVA MRAAFVAVNA
GKQVVVLVPT TLLAQQHYEN FKDRFADWPV VTEVMSRFRT AKEQTQVLKQ LEEGKVDIVI
GTHKLLQSEA KFENLGLLII DEEHRFGVRQ KEKIKALRAN VDILTLTATP IPRTLNMAMS
GMRDLSIIAT PPAKRLAVKT FVRESDPATV REAILREILR GGQVYYLHNN VESIEKCAQG
IIDLVPEARV VVAHGQMRER DLERVMSDFY HQRFNVLVCT TIIETGIDVP SANTIIIERA
DTFGLAQLHQ LRGRVGRSHH QAYAYLMTPH PKRMTSDARK RLEAIDALED LGAGFMLATQ
DLEIRGAGEL LGDEQSGHIS KIGFSLYMEM LEAAVKALKQ GKEPSLAQML NQQCEIELRI
PALLPEAYVS DVNIRLSLYK RIAGCETQEA LDELKVELID RFGLLPEATK NLMEMTLYKH
QATRLGATKI EVHAKGGSIE FSHDHVIDPG FIIGLLQSQP QIYRMEGPNK LKFSLTAETA
KDRLDVVKLL LEQLSQHRLG DK
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