| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2154 |
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| Symbol | |
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| ID | 5080030 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella putrefaciens CN-32 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009438 |
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| Strand | - |
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| Start bp | 2469478 |
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| End bp | 2470728 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640499316 |
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| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_001183674 |
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| Protein GI | 146293250 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.97636 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGGAC CGTTAGCGTT ATCTATCGGC TGGCGTTTTT ACCGCGCTCG CCAATCAAAC
AGTTTTATTA GCTTTATCTC TTTTGCATCC ACCGCCGGCA TTGCCTTGGG CGTTGCGGTA
TTGATCGTGG TGTTGTCGGC CATGAATGGT TTTGAGCGTG AGCTTGAGCA ACGACTCCTT
GGCGTTATCC CTCAAGCCGA TATTGTTGGG GTTAACGAGC CCATTGTCGA TTGGCAGAGC
GTTGCAGAGG GTGCCCTGCA AATTGAAGGT ATTCGTGGTG CGGCGCCTTT TATTCGGATA
CAAGGATTAG TGCAAAAGCC TGGTGGATTT CAAGGATTAT CCGTGGTTGG AATTGCGCCT
GAAGAAGAGA CTAAAGTGTC CACACTAGCC CAGTTTATGA CTGATGAAAG CTGGCAGAGC
CTCGCACAGG ATGAGAATCA TATTGTCCTT GGTAAAAGTT TACTGAAAAA GTTAGGACTT
GAGATTGGCG ATACGCTAGC GTTATATGTG CAGGATATGG ACCCCGAAAA TGCGGGCAGT
CTACGTGCAG CGAAGAGTCA TCGTTTTGTG GTCTCGGGCG TTTATGCCTT GGGGGGAGAG
CTTGAACTGA CGACGGCTTA TATTCCAATG CGTTATGCTG CGCAGATCCT TAATATGCAG
AATGGCGTGA CAGGGGTGCG GATCAGTGTC GAGCAAGTAT TTGATGCACC AGCCAAAGTC
CGTGAACTTG GCTATGCGCA AAAACAATCG GTTTATATTA GTGATTGGAC TCGAACCCAA
GGGCATTTAT ATCAAGATAT TCAACTGGTT CGCACCGTGA TGTACTTGGT ATTAGTGTTA
GTGATTGGTG TTGCCTGTTT TAATATTGTC TCCACCCTTG TGATGGCGGT ACGGGATAAA
GCCTCTGAAA TTGCGATTTT AATGACCATG GGGCTGAGCC GCTTAAGCAT AATGGGCATT
TTTATGGTGC AGGGCGCTCT AAATGGCCTA TTAGGCTGCA GTTTAGGGGG AATTATTGGT
ATTAGTGTTG CACTTAATTT AAGTGAGATA GCCAGTGCTA TTGAACAGTT ATTGGGTATT
GAGCTTTTAT CGGCTGATGT GTATTTCGTT GACTTTTTGC CTTCAGAATT ACATACCTCA
GATGCCATCT TAGTGATTGC TATGGCATTT GTGATGAGTC TGATTGCAAC GCTGTATCCA
GCATGGAAGG CCAGTCAAAT TGGACCTGCG CAAGCATTAG CGGGTAGGTA G
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| Protein sequence | MKGPLALSIG WRFYRARQSN SFISFISFAS TAGIALGVAV LIVVLSAMNG FERELEQRLL
GVIPQADIVG VNEPIVDWQS VAEGALQIEG IRGAAPFIRI QGLVQKPGGF QGLSVVGIAP
EEETKVSTLA QFMTDESWQS LAQDENHIVL GKSLLKKLGL EIGDTLALYV QDMDPENAGS
LRAAKSHRFV VSGVYALGGE LELTTAYIPM RYAAQILNMQ NGVTGVRISV EQVFDAPAKV
RELGYAQKQS VYISDWTRTQ GHLYQDIQLV RTVMYLVLVL VIGVACFNIV STLVMAVRDK
ASEIAILMTM GLSRLSIMGI FMVQGALNGL LGCSLGGIIG ISVALNLSEI ASAIEQLLGI
ELLSADVYFV DFLPSELHTS DAILVIAMAF VMSLIATLYP AWKASQIGPA QALAGR
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