Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_2152 |
Symbol | |
ID | 5080028 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 2467692 |
End bp | 2468417 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640499314 |
Product | RNA methyltransferase |
Protein accession | YP_001183672 |
Protein GI | 146293248 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0565] rRNA methylase |
TIGRFAM ID | [TIGR00050] RNA methyltransferase, TrmH family, group 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0159142 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTAAGTA ATATTCGTGT GGTTTTAGTG GGGACATCGC ACCCCGGCAA TATAGGTTCC ACCGCCAGAG CGATGAAAAC AATGGGTCTG TCTACGCTAT ATCTTGCCGA ACCTCGCGTA GAACCCGATG GTCAATCTAT TGCGCTTGCC GCGGGTGCTT CTGATATTTT GAAACACCTC GTTAAAGTCG ACTCACTCGC CGAAGCCATT GCCGATTGTA GTCTGGTCAT TGCCACCAGT GCGCGCAGCA GAACCTTAGA TTGGCCTATG CTTGAACCAC GCGAAGCAGG GCAGAAACTG GTTACAGAAA GCGTAACTGG CCCTGTTGCC ATTGTTTTTG GCCGTGAAAA TCATGGGCTC AGCAATGAAG AGTTGCAACA ATGTACTTAT CATGTGGCGA TCCCTGCAAA TCCTGAGTAC AGCTCACTTA ACCTCGCTCA AGCGGTACAA ATTATTTGTT ATGAAACCCG CGTTGCACAC TTAGCTGGAA TTGAATCTGC ACAAGAGCCG ACAGAATATC CATTGGCAGC CGATCAAGAG CGTTTTTTTG TACACCTTGA AAATACGTTA TTTTCTACGG GCTTTATTAT TAAAAACCAC CCTGGACAAG TGATGACTAA ATTGCGCCGT TTGTTCAGTC GTGCACGGAT TGAAAGCCAG GAAATGAATA TTCTTAGAGG GATCCTGACT TCCATCGATA AAGTGGTTAG CAATAAACAA AAATAG
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Protein sequence | MLSNIRVVLV GTSHPGNIGS TARAMKTMGL STLYLAEPRV EPDGQSIALA AGASDILKHL VKVDSLAEAI ADCSLVIATS ARSRTLDWPM LEPREAGQKL VTESVTGPVA IVFGRENHGL SNEELQQCTY HVAIPANPEY SSLNLAQAVQ IICYETRVAH LAGIESAQEP TEYPLAADQE RFFVHLENTL FSTGFIIKNH PGQVMTKLRR LFSRARIESQ EMNILRGILT SIDKVVSNKQ K
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