Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_2110 |
Symbol | |
ID | 5078315 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | + |
Start bp | 2421269 |
End bp | 2424949 |
Gene Length | 3681 bp |
Protein Length | 1226 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640499272 |
Product | exodeoxyribonuclease V, gamma subunit |
Protein accession | YP_001183630 |
Protein GI | 146293206 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTAAAGT TAATCCAGTC TAATCAAATG GAAGTACTCT GTGCCCATTT AGCCGCTTAC CTTCGCCAGA GTGTCCCCAA TACACGCCTA TTACGCAGTG AGCATATTCT GGTACAAAGC CCCGGTATGT CGACTTGGTT ACGTCTTGAA ATTGCAAAGC AAAATGGTAT TGCAGCAGCA CTCGAATTTC CTCTGCCCTC CAGTTTTACA TGGCAGTTGT GCCACCATTT ATTACCTAAT GTCCCGAAGG AAAATGCCTT CACTAAGGCT GCAATGACCT GGAAACTCAT GCAGTTATTG CCCCGTCTGT TAGCGGATGA TGCCTTTGGG CCACTTAGGC ACTATTTAGG TGATTTAAGT TTACATACGT TAGGTAACAT AAATGGATTG GATGAATTGG CTCATCAGCG TCCTGCCGAT GATATCAAGC TGTATCAGTT GTGCGGTCGT ATTGCCGATA TTTTCGATCA ATATTTAGTG TATCGCCCCG ACTGGATGTT AGCTTGGGAG CAAAACCAGC ACCCTACAAC GCTCAACAAA CCGCTCAATG AAGACCAACG CTGGCAGCCT ATTTTATGGC GCGCCTTAGT TGCCTTTAAT CGAGATGAAC TCAATCAAAG CCATTATCAC AGGGCAAACC TACACAGCGC ATTGATTGAA GCGCTCAATG ATCCCAATAC CTCACTAACC CCGTTGCCTC AACGGCTCTT TGTATTTGGT ATTTCATCAA TGGCGCCTCA AACCCTTGAA GTGCTTTATC ATTTAGCAAG CCGTATTGAT GTGATTATCT TGAGTTTGAG TCCATGCCAG CATTATTGGG GTGATATTAT CGATCCACGT CACCGTGCAC GCATGGCGGT GCAATACGCA GGCAAGCGCC AATTAGCAGA GCAATGGGAA GATAAACTTG AGGTTGGTAA TCCTCTGTTA GCAAACAATG GCAAGATGGG GCGTGAGTTA CTCGATATGT TGCTTGAGCT TCCCGCCGAG CATTGTGATT TTGGTGATGA TGTTTACTGT GAACCTTGCG ATGACCCTAA TGATCCTGCC AGTCACGCCA GTATGCTCCA CGGGGTGCAA TACGATATTT TAGAGATGCA GACCTTAGAT AGCGTACTTG GGCCTGATGC TGCGCTTTAC CAAAATATCG CAGCACGCCG CATACTTAAA AAAGATGACG AGTCAATACT CGTTAAGAGC TGCCATAGCC CACTGCGAGA AGTCGAGACC CTACACGATC ACCTTCTCGA TATGTTAAGT CGCCATCCCC AATTGTCCCC CAAAGATATT GTCGTGATGA TGCCCGATGT CGCCGCCTAT GCGCCTTATA TCGATGCTGT GTTCGCAGCC AAACAGGGCC TGCATTATAT TCCCTATGCC ATCGCGGATC GCGGCGCGGC ACAAGAATCA CCTCTTATTA ATAGTTTTTT GAATTTACTT GGGATTAATC AAAGTCGTTT CGGCTTGACC GATATCCTCA GCATCCTCGA AGTACCCGCC ATTTTGCGCC GTTTTCAGCT TGATGACGAT GAATTACAAC TGATCCGCCG CTGGCTTGAT GAAGCTGGCG TTCGTTGGGG GCGAGATCAA CAAAGTCGCC TAAAACAAGG TGTACCCGCA TTTGAGCAAA ACTCTTGGGC CTTTGGCATA AAACGACTGA TCTTAGGTTA TGCCTTAAGT GACGATGCGC CGCTCTATCA AGATCATTTA GTGGTTACCG GCATAGAAGG ACAATCGGCA CAAGCACTCG GTAAACTGCT CAACTTTATC GAAGCACTCG ATGAAACCCA ACAAATACTC GAAAAGCCCC AAACGGGCGC CGTGCGTTTA ATGGAATTAA CGACATTATT AGATGCCTTT TACGACACAG ATGAAGACGA GCGCGAGCAG TTACAAGATA TCCGCGATGC CATTGCCACC CTAGAACAAG AGCTATTATC CGCAGGAAAA CCGATCGAGG CACTATCAAC AGCCCAAGCC GATATCGCCA CGTCGCTAAC CTTAAGCATC GAAGTATTAC AGCAATGGTT TAATCAGCGT TTAACGGAAT CCCGCGTTGG TCAACGCTAT CTTGCAGGCA GTGTCAACTT TTGTACCCTT ATGCCCATGC GTTCCATTCC CTTTAAGCTT GTCTGTTTGC TCGGGATGAA TGACGGGGTA TATCCAAGAG TGCAACACCC AGTCGGTTTT GACCTTATGG CCCACTTTGG GCCGCGTAAA GGTGATCGCT CCCGCCGTCT TGATGATAGA TATCTGTTTT TAGAAGCCCT ACTCTCAGCG CGCGAGCAGT TATATATCAG CTACATTGGT CGCAGTGAAA GGGACAACTC GGAGCGTATC GCCTCGATGC TTGTTTCTGA ACTGATTGAA TATTGTCAGC TTTGTTATCT GCCTGAAGAT CTATCGCCGC AGCTTGCCAC TATCAGTAAC AGTGAAGAGG TAGAAAAAGC CCTGCTCAAT GAGATTGTCA GTCAACAGCC ATTGCAACCC TTTGATCCTA AGTTGTACCA AGCCGAAACG GCGGGCACAA AAGGGATCAA GCAAAGTTAC AGCCAACAAT GGTGTCCACC CAATACTCGA ACGGATAATG GTCGTTTTAT CGATGAATTC ACTCGGATAG TGGTCGAGAA TGAAATCACA CAGGCCGCTA TTATTGAAGA AGAACATCTG GATATTTCAG CCTTGATCCG CTTCTTTCGT AATCCGGCAC AATACTTCTT TAACCGTACA CTCAAGGTTG ATTTAAGCCT TAATATTCAA GCTGATGACA ATGACGAACC CTTTAGCTTG AATGCCCTTG AACGCTATAT GTTACAAGTA CAACTACTCG ACAATAGCAT AAGCCAAGGT GTGTTAGAAC CGGACATTGA GCTTTTAAAA CGCCTAAAAG CCAGTGGTAA CTTGCCCATG CATCCCTTTG ACGACCTACT GCTACGCCAA TATCAGCAGG ACATTAAACC GCTTATTGGC AGGACCTTAT TCCTTAAAGG CGAGCAGCAG AGCCATCATG CAGACATTAG ACTTAGCTTC GATTTAGCGA TTTCACCCAC AACTCAGCCC AGTAAAACGC GCAGAGTATG GCTTGAAGGT CGCATTGATG ATATTAGCCC TAAGGGACTC ATCAATTACC GCCCTGGCAG TGCCCATGGT CGCGATATAC TGAGGCTGTA TTTACGCCAC CTGTGCCTTA TGGCGATGGG GTATGACCAT GCTAGCTATC TATTGGATAT GGGACATTTT CATGCGCTTT CGCCCATCAC GCCAGAGCAC GCCCACCAGC TATTGACTGA TTTACTGCAA CTCTTTTATC AAGGTCAACA GCATCCCCTG TGTTTTATGC CACGCACCGC CCTTGCTTAC GCGAGCAGTG AAGGCGAACA TGCTGAAAGA CTCAATGAGG CACAGGCTGA ATGGCTAGAT GAACAAGGAG AAATAGGTGA AGGTACAGAG CCCCATTATC AACGGCTATT CCAATTCCCA CAGGATTTTA CTGAAAACAC CTTTGGCGTA CTCGCCGACC GTATTTATCG CCCCATGGTC AGTTTATACG TGAAAGACAC GCTGGCTCAG CTTGAGGACT TTGCCCTCAA TAATGGCATG AACCTCGGAA GTGTTAACTT AGATCCAGCG GCCGACATCA ATAGCGTTAG CACACAACAG CATATCTCAC GGGGAGAATA A
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Protein sequence | MLKLIQSNQM EVLCAHLAAY LRQSVPNTRL LRSEHILVQS PGMSTWLRLE IAKQNGIAAA LEFPLPSSFT WQLCHHLLPN VPKENAFTKA AMTWKLMQLL PRLLADDAFG PLRHYLGDLS LHTLGNINGL DELAHQRPAD DIKLYQLCGR IADIFDQYLV YRPDWMLAWE QNQHPTTLNK PLNEDQRWQP ILWRALVAFN RDELNQSHYH RANLHSALIE ALNDPNTSLT PLPQRLFVFG ISSMAPQTLE VLYHLASRID VIILSLSPCQ HYWGDIIDPR HRARMAVQYA GKRQLAEQWE DKLEVGNPLL ANNGKMGREL LDMLLELPAE HCDFGDDVYC EPCDDPNDPA SHASMLHGVQ YDILEMQTLD SVLGPDAALY QNIAARRILK KDDESILVKS CHSPLREVET LHDHLLDMLS RHPQLSPKDI VVMMPDVAAY APYIDAVFAA KQGLHYIPYA IADRGAAQES PLINSFLNLL GINQSRFGLT DILSILEVPA ILRRFQLDDD ELQLIRRWLD EAGVRWGRDQ QSRLKQGVPA FEQNSWAFGI KRLILGYALS DDAPLYQDHL VVTGIEGQSA QALGKLLNFI EALDETQQIL EKPQTGAVRL MELTTLLDAF YDTDEDEREQ LQDIRDAIAT LEQELLSAGK PIEALSTAQA DIATSLTLSI EVLQQWFNQR LTESRVGQRY LAGSVNFCTL MPMRSIPFKL VCLLGMNDGV YPRVQHPVGF DLMAHFGPRK GDRSRRLDDR YLFLEALLSA REQLYISYIG RSERDNSERI ASMLVSELIE YCQLCYLPED LSPQLATISN SEEVEKALLN EIVSQQPLQP FDPKLYQAET AGTKGIKQSY SQQWCPPNTR TDNGRFIDEF TRIVVENEIT QAAIIEEEHL DISALIRFFR NPAQYFFNRT LKVDLSLNIQ ADDNDEPFSL NALERYMLQV QLLDNSISQG VLEPDIELLK RLKASGNLPM HPFDDLLLRQ YQQDIKPLIG RTLFLKGEQQ SHHADIRLSF DLAISPTTQP SKTRRVWLEG RIDDISPKGL INYRPGSAHG RDILRLYLRH LCLMAMGYDH ASYLLDMGHF HALSPITPEH AHQLLTDLLQ LFYQGQQHPL CFMPRTALAY ASSEGEHAER LNEAQAEWLD EQGEIGEGTE PHYQRLFQFP QDFTENTFGV LADRIYRPMV SLYVKDTLAQ LEDFALNNGM NLGSVNLDPA ADINSVSTQQ HISRGE
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