| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2100 |
|---|
| Symbol | |
|---|
| ID | 5078305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 2408126 |
|---|
| End bp | 2409289 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640499262 |
|---|
| Product | cation diffusion facilitator family transporter |
|---|
| Protein accession | YP_001183620 |
|---|
| Protein GI | 146293196 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1230] Co/Zn/Cd efflux system component |
|---|
| TIGRFAM ID | [TIGR01297] cation diffusion facilitator family transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0353421 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAG AACATTCAGA ACAACCAGCC AGTGGTCTAG ATGCCGCAAA CACCACTACA
GGGCACGCAA TTACAAAGTG GCAGCATTCC CATGGCTTTT CGAGCCAAAA TATCGCTGGC
GAGAAAAATA CACGCTATGT TCTCTATTTA ACGCTGATCA CTATGGTGGC AGAGATTGTC
GCTGGTACGA TTTACGGCTC AATGGCACTG TTAGCCGATG GTTGGCATAT GGGCACCCAT
GCTGCGGCTT TTATGATCAC CTTGTTTGCC TATTCCTATG CCCGTAAACA TGCCAATGAT
CCTACTTTTG CGTTTGGTAC AGGAAAGGTG AGTGTGCTCG GTGGTTACAC TAGCGCGATC
GCCCTAGGTT TAGTGGCATT AATCATGCTG GTTGAATCTG GGATACGACT TATCAATCCT
GAGCAAATTC ATTTTAATGA AGCGATTTTT GTGGCTGTGA TAGGGTTAAG TGTAAATGTG
CTGAGTGTCT TTTTGCTCAA AGATCATCAT AGCCATGATC ATGGTCATCA TCACGGTCAT
GACCACTCCC ATATGCATTC TGAACATGAG CATGTTCATC ACGATGATGG ACACCATGAC
CATACACATT GCCACCATAA TGCTGAGCAT GAGCATGAGC ATGAGCATGA GCATGAGCAT
GAGCATGAGC ATGAGCATGA GCATGAGCAC AAGAGTCAGA AGGCACATGG TGGCCATGAC
CACAACCTAC GCGCCGCCTA TTTTCATGTT TTAGCCGATG CGTTAACCTC AGTGCTCGCT
ATTGTGGCAT TGCTATTTGG TAAATATATG GGCTTAACTT GGCTCGATCC TATTATGGGA
ATTGTCGGCG CCGTCATTAT TAGCCGCTGG TCTTGGGGGC TTATTCAGCA AACCAGCCCC
ATTTTACTCG ATGGCGGTGT GAAGGAATCA TTGCAGCATA GGGTTAAACA AACAATCGAA
GCTGTGCCGG ATCATCAAGT CGCCGATTTA CATATATGGC GTCTGAGTGC AGATCATCAT
GCTATGATGG TGTCAATCGT GTCTCACTCA CCGAAAGAAG CCAGCTATTT TAATCAGTTA
CTGACTCAAT TTCCTGAGTT ATCACATATC ACTATTGAAT TACATACGTG TCGCCAAAGC
GAGTGTTTGG CTAAGGAAGT TTAA
|
|---|
| Protein sequence | MKSEHSEQPA SGLDAANTTT GHAITKWQHS HGFSSQNIAG EKNTRYVLYL TLITMVAEIV
AGTIYGSMAL LADGWHMGTH AAAFMITLFA YSYARKHAND PTFAFGTGKV SVLGGYTSAI
ALGLVALIML VESGIRLINP EQIHFNEAIF VAVIGLSVNV LSVFLLKDHH SHDHGHHHGH
DHSHMHSEHE HVHHDDGHHD HTHCHHNAEH EHEHEHEHEH EHEHEHEHEH KSQKAHGGHD
HNLRAAYFHV LADALTSVLA IVALLFGKYM GLTWLDPIMG IVGAVIISRW SWGLIQQTSP
ILLDGGVKES LQHRVKQTIE AVPDHQVADL HIWRLSADHH AMMVSIVSHS PKEASYFNQL
LTQFPELSHI TIELHTCRQS ECLAKEV
|
|---|
| |