| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_2052 |
|---|
| Symbol | |
|---|
| ID | 5079478 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | + |
|---|
| Start bp | 2344074 |
|---|
| End bp | 2345489 |
|---|
| Gene Length | 1416 bp |
|---|
| Protein Length | 471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640499214 |
|---|
| Product | sugar (glycoside-Pentoside-hexuronide) transporter |
|---|
| Protein accession | YP_001183572 |
|---|
| Protein GI | 146293148 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
|---|
| TIGRFAM ID | [TIGR00792] sugar (Glycoside-Pentoside-Hexuronide) transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCTC ATAAAATGTC GGTCATTGAA AAGATCGGTT ACGGCTCAGG GGATATGGCC
GTCAACGTCG TGATATCTTC AATGATGTTA ATTATTACCT TCTTTTATAC GGATATTTTT
GGCCTAAAGC CCGCCGATGT GGGCATTTTA TTTCTACTCG TTCGATTAAT CGATGCCATC
ACGGATCCCT TAATGGGCAT CATTAATGAT AAAGTCACCA CGCGCTGGGG GCGTTACCGT
CCCTACTTCT TATTTATGGC AATCCCCTTC GGGCTTTCGG TATTTTTAAC CTTCAGCACG
CCGGATTGGG ACTATAACGC CAAACTCATT TGGGCTTATT CGACTTATAT TCTTGTGACC
ATCATTTTTA CCACGGTCAC TATTCCCTAT ATTTCCATTA TTAGTGTACT GACGGATAAT
CCAAAGGAGC GCTTATCCGC TAACGGTTAT CGGTTATTCT TCGCCAAAAT TGCCGCCTTT
TTAGTGACTA TTATTGTCCC TATATTAGCT TCCTCTTGGG GAGGAGATGA TATTGCTGCA
GGTTATCAAA AGGCCATGGG AGTGATGGCG TTAATGGCAA CACTGCTGTT TTTATTCTGT
TTTTTCACTA CAACTGAACG TGTAGCCTAT AAGGTTGAAA CTAAACCTAT TTCAATGCAA
ATACGTCTAT TGTTAAAAAA TGATCAGTGG CTCATTTTGA CCGCTATTTG TGTCATTGGC
ACTATTGGTT ATGTGATCCG CGGTTCGGTT GCCGCCTATT ACGCCACCTA CTTCCTTGGT
GGTGATGCCA AAATGCTTTC GGCCTTTTTA TCAACAGGAG TGGGTGCGGC AATCCTTGCG
ATGGTCGCCT CAACTTGGAT CACTAAGCGC TTTTGTAAAC TCAAATTATT CCGTTACAGC
CAAATTGCTG TAGGGGTTTT GAGCGTGGTG ATGTTTTTTG CCGTTCAACC CGGAGACATA
GTGTTAGCCT TTGTGCTCTA TTTTGCGATT TCTTTTGTGG TTGATTTGCA CGCTCCAGTT
TTCTGGTCAG TGATTTCAGA ATCCGTCGAT TACGGAACCG TCAAAACGGG TCATAGGGTA
TCAGGCCTTG CATTTGGGGG GATATCCTTT GCACAAAAAG CGGGAATGGG AGCGGCAGGT
TTTGTAGTTG GCATGTTATT GACCTACTTT AATTATCAAC CGGGACAAGA ACAAACGTCT
ACGACGCTCA TAGGCATTTC ACTGATGCTA ACCATCATAC CTGGCGCGTT CCATACCTTG
ATGGGCTTAT TGATGTTCAA ATACAAGATA TCGGACCGTG TCTATGAGGA CATTAAGCTG
TCACTGCCCG ATATGGAAGT AATTGATGGG AAAAGTACGC CAGAGACACA GCCTAATGTC
CACAAGGATA GTACCCAAAC CCAAGTTTCT ATATAG
|
|---|
| Protein sequence | MSSHKMSVIE KIGYGSGDMA VNVVISSMML IITFFYTDIF GLKPADVGIL FLLVRLIDAI
TDPLMGIIND KVTTRWGRYR PYFLFMAIPF GLSVFLTFST PDWDYNAKLI WAYSTYILVT
IIFTTVTIPY ISIISVLTDN PKERLSANGY RLFFAKIAAF LVTIIVPILA SSWGGDDIAA
GYQKAMGVMA LMATLLFLFC FFTTTERVAY KVETKPISMQ IRLLLKNDQW LILTAICVIG
TIGYVIRGSV AAYYATYFLG GDAKMLSAFL STGVGAAILA MVASTWITKR FCKLKLFRYS
QIAVGVLSVV MFFAVQPGDI VLAFVLYFAI SFVVDLHAPV FWSVISESVD YGTVKTGHRV
SGLAFGGISF AQKAGMGAAG FVVGMLLTYF NYQPGQEQTS TTLIGISLML TIIPGAFHTL
MGLLMFKYKI SDRVYEDIKL SLPDMEVIDG KSTPETQPNV HKDSTQTQVS I
|
|---|
| |