Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sputcn32_2018 |
Symbol | |
ID | 5078221 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella putrefaciens CN-32 |
Kingdom | Bacteria |
Replicon accession | NC_009438 |
Strand | - |
Start bp | 2301188 |
End bp | 2303116 |
Gene Length | 1929 bp |
Protein Length | 642 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640499178 |
Product | threonyl-tRNA synthetase |
Protein accession | YP_001183538 |
Protein GI | 146293114 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0441] Threonyl-tRNA synthetase |
TIGRFAM ID | [TIGR00418] threonyl-tRNA synthetase |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000164437 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTGTAA TTACACTTCC CGATGGTAGC AAACGCGAGT TTGCTCATGC TGTATCGACT CTCGATGTCG CCGCCGATAT CGGCCCTGGT CTTGCTAAAG CTTGTATCGC TGGCCGCGTT AATGGCGAAT TAAAAGATGC TTGCGATCTC ATTGAAACCG ATGCTGAGCT ATCAATCATT ACCGCCAAAG ACGAAGAAGG TGTTGAAATT CTTCGCCATT CTTGCGCGCA TTTATTAGGT CACGCGATTA AGCAAATGTG GCCAGAAACC AAGATGGCGA TTGGTCCTGT TATCGATAAT GGCTTTTATT ATGATATCGA CCTTGAGCAC AAGCTGACTC AAGATGACAT CGAAGCCTTA GAAAAGCGCA TGCTTCAACT GGCAAAAACC AACTATGACG TTGTAAAACG TGTCGTTAGC TGGCAAGAAG CCCGTGATAC ATTCGCGGCG CGCGGTGAAG AGTATAAGAT TGCCATTCTG GATGAAAATA TCAGCAAAGA CGCGACACCT GCGCTATATC ATCACGAAGA ATACACAGAC ATGTGTCGTG GACCGCACGT ACCTAATATG CGTTTCTGCC AACATTTCAA ATTAATGAGC ATTGCCGGCG CTTATTGGCG TGGCAACTCA GAAAATAAGA TGTTGCAACG TATCTATGGT ACCGCATGGG CCGACAAAAA AGCCCTGAGT ACACACTTAA CCCGTCTTGA AGAAGCGGCT AAGCGTGACC ACCGTAAAAT CGGTAAACAG CTCGACTTGT ATCATATGCA AGAAGAAGCG CCTGGTATGG TGTTTTGGCA TAACGACGGT TGGAGCATCT TCCTCGAATT AGAGAGATTC ATTCGCCGTA AGCTAAACCA ATACACTTAC CAAGAGGTGA AAGGCCCATT AATGATGGAC CGCGTGTTGT GGGAGCGTTC TGGTCACTGG GATAAATACT CAGAAGCCAT GTTCACGACC AGCAGTGAAA ACCGCGAATA TGCTATCAAG CCGATGAACT GCCCAGGCCA CGTGCAGATC TTCAACCAAG GCTTGAAATC TTACCGCGAC TTGCCACTGC GTATGGCGGA ATTTGGTTGC TGCCACCGTA ATGAACCTTC AGGCTCATTG CATGGATTAA TGCGTGTACG TGGTTTTACC CAAGATGATG CCCATATTTT CTGTACTGAT GATCAAGTTC AAGAAGAAGT GAGTGCCTGT ATCCAAATGG TATACGATAC ATATTCTACT TTCGGTTTTG AAAACATCGT CGTAAAACTG TCGACGCGCC CAGAAAAACG TATCGGTGAC GATGCCATGT GGGACAGAGC AGAAGAAGCA TTAAAACAGG CTTTACGTGC AAACAACATT GAGTTCACCC TTTTACCAGG TGAAGGTGCG TTCTACGGCC CCAAAATCGA ATTTACTTTA CACGATTGTT TGGACCGTGC ATGGCAATGT GGTACTGTGC AGCTCGATTA TGCTTTACCA AGCCGTCTTG GTGCAACTTA TGTTGCCGAA GATAACAGCC GTCAGACCCC AGTCATGATC CATCGTGCTA TTTTAGGCTC TTTGGAACGA TTCTTGGGTA TCTTGATAGA AGAATATGCA GGACGTTTCC CAACGTGGTT GGCCCCAATG CAAGTTGTTG TGATGAATAT CACCGACAAA CAGGCTGATT ATGTTCAAGA AATCGTCAAA TTCTTCAAAG AACAAGGTAT TCGAGCGTCT TTTGACTTGA GGAATGAGAA AATAGGCTTT AAAATACGCG AGCACACCTT AAGGCGTGTC CCTTATTTGT TGGTCGTTGG CGATCAAGAA ATGGAAAATA AGGAAGTAGC GGTGCGTACC CGTGATGGTA TTGATTTAGG TAAGATGCGA CTTGAAGATT TCGCCACTAA AATCCATCAA CAGATTTCGC TCCGTAGTCT CAAATTGTTG GAGGAATAG
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Protein sequence | MPVITLPDGS KREFAHAVST LDVAADIGPG LAKACIAGRV NGELKDACDL IETDAELSII TAKDEEGVEI LRHSCAHLLG HAIKQMWPET KMAIGPVIDN GFYYDIDLEH KLTQDDIEAL EKRMLQLAKT NYDVVKRVVS WQEARDTFAA RGEEYKIAIL DENISKDATP ALYHHEEYTD MCRGPHVPNM RFCQHFKLMS IAGAYWRGNS ENKMLQRIYG TAWADKKALS THLTRLEEAA KRDHRKIGKQ LDLYHMQEEA PGMVFWHNDG WSIFLELERF IRRKLNQYTY QEVKGPLMMD RVLWERSGHW DKYSEAMFTT SSENREYAIK PMNCPGHVQI FNQGLKSYRD LPLRMAEFGC CHRNEPSGSL HGLMRVRGFT QDDAHIFCTD DQVQEEVSAC IQMVYDTYST FGFENIVVKL STRPEKRIGD DAMWDRAEEA LKQALRANNI EFTLLPGEGA FYGPKIEFTL HDCLDRAWQC GTVQLDYALP SRLGATYVAE DNSRQTPVMI HRAILGSLER FLGILIEEYA GRFPTWLAPM QVVVMNITDK QADYVQEIVK FFKEQGIRAS FDLRNEKIGF KIREHTLRRV PYLLVVGDQE MENKEVAVRT RDGIDLGKMR LEDFATKIHQ QISLRSLKLL EE
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