Gene Sputcn32_2018 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSputcn32_2018 
Symbol 
ID5078221 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella putrefaciens CN-32 
KingdomBacteria 
Replicon accessionNC_009438 
Strand
Start bp2301188 
End bp2303116 
Gene Length1929 bp 
Protein Length642 aa 
Translation table11 
GC content46% 
IMG OID640499178 
Productthreonyl-tRNA synthetase 
Protein accessionYP_001183538 
Protein GI146293114 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0441] Threonyl-tRNA synthetase 
TIGRFAM ID[TIGR00418] threonyl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000164437 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTGTAA TTACACTTCC CGATGGTAGC AAACGCGAGT TTGCTCATGC TGTATCGACT 
CTCGATGTCG CCGCCGATAT CGGCCCTGGT CTTGCTAAAG CTTGTATCGC TGGCCGCGTT
AATGGCGAAT TAAAAGATGC TTGCGATCTC ATTGAAACCG ATGCTGAGCT ATCAATCATT
ACCGCCAAAG ACGAAGAAGG TGTTGAAATT CTTCGCCATT CTTGCGCGCA TTTATTAGGT
CACGCGATTA AGCAAATGTG GCCAGAAACC AAGATGGCGA TTGGTCCTGT TATCGATAAT
GGCTTTTATT ATGATATCGA CCTTGAGCAC AAGCTGACTC AAGATGACAT CGAAGCCTTA
GAAAAGCGCA TGCTTCAACT GGCAAAAACC AACTATGACG TTGTAAAACG TGTCGTTAGC
TGGCAAGAAG CCCGTGATAC ATTCGCGGCG CGCGGTGAAG AGTATAAGAT TGCCATTCTG
GATGAAAATA TCAGCAAAGA CGCGACACCT GCGCTATATC ATCACGAAGA ATACACAGAC
ATGTGTCGTG GACCGCACGT ACCTAATATG CGTTTCTGCC AACATTTCAA ATTAATGAGC
ATTGCCGGCG CTTATTGGCG TGGCAACTCA GAAAATAAGA TGTTGCAACG TATCTATGGT
ACCGCATGGG CCGACAAAAA AGCCCTGAGT ACACACTTAA CCCGTCTTGA AGAAGCGGCT
AAGCGTGACC ACCGTAAAAT CGGTAAACAG CTCGACTTGT ATCATATGCA AGAAGAAGCG
CCTGGTATGG TGTTTTGGCA TAACGACGGT TGGAGCATCT TCCTCGAATT AGAGAGATTC
ATTCGCCGTA AGCTAAACCA ATACACTTAC CAAGAGGTGA AAGGCCCATT AATGATGGAC
CGCGTGTTGT GGGAGCGTTC TGGTCACTGG GATAAATACT CAGAAGCCAT GTTCACGACC
AGCAGTGAAA ACCGCGAATA TGCTATCAAG CCGATGAACT GCCCAGGCCA CGTGCAGATC
TTCAACCAAG GCTTGAAATC TTACCGCGAC TTGCCACTGC GTATGGCGGA ATTTGGTTGC
TGCCACCGTA ATGAACCTTC AGGCTCATTG CATGGATTAA TGCGTGTACG TGGTTTTACC
CAAGATGATG CCCATATTTT CTGTACTGAT GATCAAGTTC AAGAAGAAGT GAGTGCCTGT
ATCCAAATGG TATACGATAC ATATTCTACT TTCGGTTTTG AAAACATCGT CGTAAAACTG
TCGACGCGCC CAGAAAAACG TATCGGTGAC GATGCCATGT GGGACAGAGC AGAAGAAGCA
TTAAAACAGG CTTTACGTGC AAACAACATT GAGTTCACCC TTTTACCAGG TGAAGGTGCG
TTCTACGGCC CCAAAATCGA ATTTACTTTA CACGATTGTT TGGACCGTGC ATGGCAATGT
GGTACTGTGC AGCTCGATTA TGCTTTACCA AGCCGTCTTG GTGCAACTTA TGTTGCCGAA
GATAACAGCC GTCAGACCCC AGTCATGATC CATCGTGCTA TTTTAGGCTC TTTGGAACGA
TTCTTGGGTA TCTTGATAGA AGAATATGCA GGACGTTTCC CAACGTGGTT GGCCCCAATG
CAAGTTGTTG TGATGAATAT CACCGACAAA CAGGCTGATT ATGTTCAAGA AATCGTCAAA
TTCTTCAAAG AACAAGGTAT TCGAGCGTCT TTTGACTTGA GGAATGAGAA AATAGGCTTT
AAAATACGCG AGCACACCTT AAGGCGTGTC CCTTATTTGT TGGTCGTTGG CGATCAAGAA
ATGGAAAATA AGGAAGTAGC GGTGCGTACC CGTGATGGTA TTGATTTAGG TAAGATGCGA
CTTGAAGATT TCGCCACTAA AATCCATCAA CAGATTTCGC TCCGTAGTCT CAAATTGTTG
GAGGAATAG
 
Protein sequence
MPVITLPDGS KREFAHAVST LDVAADIGPG LAKACIAGRV NGELKDACDL IETDAELSII 
TAKDEEGVEI LRHSCAHLLG HAIKQMWPET KMAIGPVIDN GFYYDIDLEH KLTQDDIEAL
EKRMLQLAKT NYDVVKRVVS WQEARDTFAA RGEEYKIAIL DENISKDATP ALYHHEEYTD
MCRGPHVPNM RFCQHFKLMS IAGAYWRGNS ENKMLQRIYG TAWADKKALS THLTRLEEAA
KRDHRKIGKQ LDLYHMQEEA PGMVFWHNDG WSIFLELERF IRRKLNQYTY QEVKGPLMMD
RVLWERSGHW DKYSEAMFTT SSENREYAIK PMNCPGHVQI FNQGLKSYRD LPLRMAEFGC
CHRNEPSGSL HGLMRVRGFT QDDAHIFCTD DQVQEEVSAC IQMVYDTYST FGFENIVVKL
STRPEKRIGD DAMWDRAEEA LKQALRANNI EFTLLPGEGA FYGPKIEFTL HDCLDRAWQC
GTVQLDYALP SRLGATYVAE DNSRQTPVMI HRAILGSLER FLGILIEEYA GRFPTWLAPM
QVVVMNITDK QADYVQEIVK FFKEQGIRAS FDLRNEKIGF KIREHTLRRV PYLLVVGDQE
MENKEVAVRT RDGIDLGKMR LEDFATKIHQ QISLRSLKLL EE